- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.52 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DG- DC- DC- DG- DG- DT- DT: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3'(Non-covalent)
- 2 x DA- DA- DC- DC- DG- DG- DC: 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3'(Non-covalent)
DA-DA-DC-DC-DG-DG-DC.2: 31 residues within 4Å:- Chain A: Y.76, R.90, G.91, K.92, K.107, Q.108, N.109
- Chain B: P.35, D.113, V.127, K.128, T.129, S.135, A.136, F.137, A.138, P.139, N.140, A.203, Q.208
- Ligands: DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.3, DG-DC-DC-DG-DG-DT-DT.3, DG-DC-DC-DG-DG-DT-DT.3, DG-DC-DC-DG-DG-DT-DT.3, DG-DC-DC-DG-DG-DT-DT.3, DG-DC-DC-DG-DG-DT-DT.3, DG-DC-DC-DG-DG-DT-DT.3, DA-DA-DC-DC-DG-DG-DC.4, MN.7, MN.8
Protein-ligand interaction information (PLIP) not availableDA-DA-DC-DC-DG-DG-DC.4: 29 residues within 4Å:- Chain A: A.31, A.32, E.37, D.113, V.127, K.128, T.129, S.135, A.136, F.137, A.138, P.139, N.140, Q.208
- Chain B: R.90, G.91, K.92, Q.108
- Ligands: DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.1, DG-DC-DC-DG-DG-DT-DT.1, DA-DA-DC-DC-DG-DG-DC.2, DG-DC-DC-DG-DG-DT-DT.3, MN.5, MN.6
Protein-ligand interaction information (PLIP) not available- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.5: 5 residues within 4Å:- Chain A: E.37, D.113, V.127
- Ligands: DA-DA-DC-DC-DG-DG-DC.4, DA-DA-DC-DC-DG-DG-DC.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.37, A:D.113, A:V.127, H2O.12
MN.6: 7 residues within 4Å:- Chain A: D.110, T.111, A.112, D.113, D.126
- Ligands: DG-DC-DC-DG-DG-DT-DT.3, DA-DA-DC-DC-DG-DG-DC.4
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.113, H2O.3, H2O.12
MN.7: 4 residues within 4Å:- Chain B: D.113, V.127
- Ligands: DA-DA-DC-DC-DG-DG-DC.2, DA-DA-DC-DC-DG-DG-DC.2
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.113, B:V.127, H2O.11
MN.8: 7 residues within 4Å:- Chain B: D.110, T.111, A.112, D.113, D.126
- Ligands: DG-DC-DC-DG-DG-DT-DT.1, DA-DA-DC-DC-DG-DG-DC.2
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Babic, A.C. et al., DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol. (2008)
- Release Date
- 2008-08-26
- Peptides
- Type-2 restriction enzyme HindII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.52 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DG- DC- DC- DG- DG- DT- DT: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DT)-3'(Non-covalent)
- 2 x DA- DA- DC- DC- DG- DG- DC: 5'-D(P*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3'(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Babic, A.C. et al., DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol. (2008)
- Release Date
- 2008-08-26
- Peptides
- Type-2 restriction enzyme HindII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B