SMTL ID : 3e6a.1

Crystal structure and Functional Analysis of Glyceraldehyde-3-phosphate Dehydrogenase from Oryza Sativa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.77 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.183, T.185, R.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.185, A:R.235 SO4.2: 6 residues within 4Å: Chain A: S.152, T.154, T.155, T.212, G.213, A.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.152, A:T.155, A:T.212, A:T.212, A:G.213, A:A.214 SO4.3: 3 residues within 4Å: Chain B: T.183, T.185, R.235 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.183, B:T.183, B:T.185 Salt bridges: B:R.235 SO4.4: 4 residues within 4Å: Chain B: S.152, T.154, T.212, A.214 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.152, B:T.154, B:T.212, B:T.212, B:A.214 SO4.5: 5 residues within 4Å: Chain C: S.152, T.154, T.212, G.213, A.214 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.152, C:S.152, C:T.154, C:G.213, C:A.214 SO4.6: 3 residues within 4Å: Chain C: T.183, T.185, R.235 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.183, C:T.183, C:T.185 Salt bridges: C:R.235 SO4.7: 5 residues within 4Å: Chain D: S.152, T.154, T.212, G.213, A.214 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.152, D:T.155, D:T.212 SO4.8: 3 residues within 4Å: Chain D: T.183, T.185, R.235 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tien, Y.C. et al., Crystal structure and Functional Analysis of Glyceraldehyde-3-phosphate Dehydrogenase from Oryza Sativa. To be Published

Release Date

2009-08-18

Peptides

Glyceraldehyde-3-phosphate dehydrogenase, cytosolic: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
A

C
B

D
C

Glyceraldehyde-3-phosphate dehydrogenase, cytosolic