SMTL ID : 3e7n.2 (1 other biounit)

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-10-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: D.31, L.34, H.109, P.130, Y.131 Chain B: H.23 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.33, A:Y.131, A:N.133 EDO.2: 7 residues within 4Å: Chain B: D.31, G.33, L.34, P.130, Y.131, N.133 Chain J: N.2 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain J Hydrogen bonds: B:G.33, B:Y.131, B:N.133, J:N.2 EDO.3: 6 residues within 4Å: Chain C: D.31, G.33, L.34, P.130, Y.131, N.133 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.33, C:Y.131, C:N.133 EDO.4: 6 residues within 4Å: Chain E: D.31, G.33, L.34, H.109, N.133 Chain G: N.2 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain G Hydrogen bonds: E:D.31, E:Y.131, E:N.133, G:N.2 EDO.5: 6 residues within 4Å: Chain A: N.2 Chain F: D.31, G.33, L.34, Y.131, N.133 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:N.2, F:Y.131, F:N.133, F:N.133 EDO.6: 7 residues within 4Å: Chain G: D.31, G.33, L.34, H.109, P.130, Y.131, N.133 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:G.33, G:Y.131 EDO.7: 5 residues within 4Å: Chain I: D.31, L.34, H.109, Y.131 Chain J: H.23 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:Y.131, I:N.133 EDO.8: 5 residues within 4Å: Chain F: H.23 Chain J: D.31, L.34, Y.131, N.133 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain F Hydrogen bonds: J:Y.131, J:N.133, J:N.133, F:H.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2. To be Published

Release Date

2008-08-26

Peptides

D-ribose high-affinity transport system: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

F
K

G
L

H
M

I
N

J
O

D-ribose high-affinity transport system

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