- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 6 residues within 4Å:- Chain A: D.10, T.54, G.55, E.56, K.80, N.106
Ligand excluded by PLIPCL.3: 5 residues within 4Å:- Chain A: F.21
- Chain B: F.21
- Chain C: F.21
- Chain D: F.21
- Ligands: PG4.8
Ligand excluded by PLIPCL.13: 6 residues within 4Å:- Chain B: D.10, T.54, G.55, E.56, K.80, N.106
Ligand excluded by PLIPCL.20: 6 residues within 4Å:- Chain C: D.10, T.54, G.55, E.56, K.80, N.106
Ligand excluded by PLIPCL.26: 6 residues within 4Å:- Chain D: D.10, T.54, G.55, E.56, K.80, N.106
Ligand excluded by PLIP- 6 x ACY: ACETIC ACID(Non-functional Binders)
ACY.4: 8 residues within 4Å:- Chain A: T.34, S.37, R.64, K.67, L.68
- Chain C: M.20, Y.22, E.56
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.34
- Water bridges: A:K.67
- Salt bridges: A:R.64, A:K.67
ACY.5: 3 residues within 4Å:- Chain A: F.125, R.128, R.129
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:R.129
- Water bridges: A:R.128
- Salt bridges: A:R.128
ACY.14: 8 residues within 4Å:- Chain A: M.20, Y.22, E.56
- Chain B: T.34, S.37, R.64, K.67, L.68
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.34, B:T.34
- Water bridges: B:K.67
- Salt bridges: B:R.64, B:K.67
ACY.21: 8 residues within 4Å:- Chain C: T.34, S.37, R.64, K.67, L.68
- Chain D: M.20, Y.22, E.56
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.34, C:T.34
- Water bridges: C:K.67
- Salt bridges: C:R.64, C:K.67
ACY.27: 7 residues within 4Å:- Chain B: M.20, E.56
- Chain D: T.34, S.37, R.64, K.67, L.68
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.34, D:S.37
- Water bridges: D:K.67
- Salt bridges: D:R.64, D:K.67
ACY.28: 3 residues within 4Å:- Chain D: F.125, R.128, R.129
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:R.129
- Salt bridges: D:R.128
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 5 residues within 4Å:- Chain A: H.44, G.47, I.48, P.49, D.71
2 PLIP interactions:2 interactions with chain A- Water bridges: A:G.47, A:D.71
PEG.7: 6 residues within 4Å:- Chain A: Y.72, F.74, A.83, E.86, L.87, E.90
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.87
PEG.15: 5 residues within 4Å:- Chain B: H.44, G.47, I.48, P.49, D.71
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.71
PEG.22: 5 residues within 4Å:- Chain C: H.44, G.47, I.48, P.49, D.71
1 PLIP interactions:1 interactions with chain C- Water bridges: C:G.47
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.8: 16 residues within 4Å:- Chain A: D.17, K.31, G.139, G.140
- Chain B: D.17, K.31
- Chain C: D.17, K.31
- Chain D: D.17, K.31, N.33, G.139, G.140, E.141
- Ligands: CL.3, EDO.16
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: A:K.31, A:G.140, B:K.31, C:K.31, D:K.31, D:G.140
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 5 residues within 4Å:- Chain A: P.124, F.125, Y.126, R.128
- Chain B: E.149
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.126
- Water bridges: A:F.125, A:F.125
EDO.10: 5 residues within 4Å:- Chain A: L.156, F.159, I.160, I.163
- Chain C: K.112
No protein-ligand interaction detected (PLIP)EDO.11: 4 residues within 4Å:- Chain A: M.1, I.133, F.134, K.150
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.134, A:K.150
- Water bridges: A:K.150
EDO.16: 9 residues within 4Å:- Chain A: D.17
- Chain B: D.17, K.31, N.33, G.139, G.140, E.141
- Chain D: K.31
- Ligands: PG4.8
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:K.31, B:K.31, B:G.140
EDO.17: 5 residues within 4Å:- Chain B: A.65, E.66, K.67, K.69, V.70
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.66
EDO.18: 4 residues within 4Å:- Chain A: K.112
- Chain B: I.160, I.163, Q.164
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.112
EDO.23: 7 residues within 4Å:- Chain C: K.5, L.6, G.47, I.48, P.49, L.91, I.93
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.5
EDO.24: 2 residues within 4Å:- Chain C: E.59, R.62
No protein-ligand interaction detected (PLIP)EDO.30: 5 residues within 4Å:- Chain C: F.41, V.162, I.163
- Chain D: L.105, N.106
1 PLIP interactions:1 interactions with chain D- Water bridges: D:N.106
EDO.31: 6 residues within 4Å:- Chain D: R.145, E.146, F.147, E.149, K.150
- Ligands: EDO.32
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.146, D:E.149, D:K.150
EDO.32: 8 residues within 4Å:- Chain B: P.124, F.125, Y.126
- Chain D: K.137, R.145, E.146, E.149
- Ligands: EDO.31
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Water bridges: B:F.125, B:F.125, B:F.125
- Hydrogen bonds: D:R.145, D:R.145
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, Z. et al., Structure-Function Analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate-9-phosphate Phosphatase Defines Specificity Elements in Type C0 Haloalkanoate Dehalogenase Family Members. J.Biol.Chem. (2009)
- Release Date
- 2008-11-04
- Peptides
- Acylneuraminate cytidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x ACY: ACETIC ACID(Non-functional Binders)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, Z. et al., Structure-Function Analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate-9-phosphate Phosphatase Defines Specificity Elements in Type C0 Haloalkanoate Dehalogenase Family Members. J.Biol.Chem. (2009)
- Release Date
- 2008-11-04
- Peptides
- Acylneuraminate cytidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D