SMTL ID : 3e8x.1

Putative NAD-dependent epimerase/dehydratase from Bacillus halodurans.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 22 residues within 4Å: Chain A: G.28, N.30, G.31, K.32, V.33, R.53, Q.57, N.73, L.74, A.92, G.93, I.106, D.107, S.130, S.131, Y.147, K.151, P.170, G.171, P.172, L.173, R.197 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.173, A:L.173 Hydrogen bonds: A:N.30, A:N.30, A:N.30, A:K.32, A:V.33, A:Q.57, A:N.73, A:L.74, A:A.91, A:G.93, A:D.107, A:D.107, A:Y.147, A:K.151, A:L.173, A:R.197 Water bridges: A:R.53, A:R.53, A:R.53, A:Q.57, A:G.95 Salt bridges: A:K.32, A:K.32, A:R.53, A:R.197 pi-Cation interactions: A:R.53 NAP.3: 22 residues within 4Å: Chain B: G.28, N.30, G.31, K.32, V.33, R.53, Q.57, N.73, L.74, A.92, G.93, I.106, D.107, S.130, S.131, Y.147, K.151, P.170, G.171, P.172, L.173, R.197 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:L.173, B:L.173 Hydrogen bonds: B:N.30, B:N.30, B:N.30, B:K.32, B:V.33, B:Q.57, B:N.73, B:L.74, B:A.91, B:G.93, B:D.107, B:K.151, B:L.173, B:R.197 Water bridges: B:R.53, B:R.53, B:R.53, B:Q.57, B:G.95 Salt bridges: B:K.32, B:K.32, B:R.53, B:R.197 pi-Cation interactions: B:R.53

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: G.133, V.135, D.136, H.187 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: G.133, V.135, D.136, H.187 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., X-ray crystal structure of putative NAD-dependent epimerase/dehydratase from Bacillus halodurans. To be Published

Release Date

2008-09-02

Peptides

Putative NAD-dependent epimerase/dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative NAD-dependent epimerase/dehydratase