SMTL ID : 3e9q.1

Crystal Structure of the Short Chain Dehydrogenase from Shigella flexneri

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.40, A.41, S.42, D.43, G.64, R.65, N.66 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.42, A:S.42, A:S.42, A:D.43, A:R.65, A:N.66 Water bridges: A:G.40, A:R.65, A:R.65 Salt bridges: A:R.65 SO4.2: 7 residues within 4Å: Chain A: S.174, G.216, G.217, R.223, R.267, P.269, G.270 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.174, A:G.217, A:G.270 Water bridges: A:S.174, A:R.180, A:R.180, A:N.214, A:N.214, A:R.223, A:R.223 Salt bridges: A:R.223, A:R.267 SO4.5: 6 residues within 4Å: Chain B: G.40, A.41, S.42, G.64, R.65, N.66 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.42, B:S.42, B:R.65, B:N.66 Water bridges: B:G.40, B:N.66 Salt bridges: B:R.65 SO4.6: 8 residues within 4Å: Chain B: S.174, R.180, G.216, G.217, R.223, R.267, P.269, G.270 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.174, B:R.180, B:R.180, B:G.270, B:G.270 Water bridges: B:S.174, B:S.174, B:N.214, B:N.214, B:N.214, B:G.216, B:G.217, B:G.217, B:R.223, B:R.223, B:R.223 Salt bridges: B:R.223, B:R.267

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: D.43, G.44, R.47, T.220, A.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.44, A:R.47, A:A.221 EDO.4: 5 residues within 4Å: Chain A: Q.139 Chain B: C.95, T.96, S.97, M.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:C.95, B:S.97 Water bridges: B:T.96, B:E.98

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain B: Y.24, T.52, Y.56, M.242, P.243, L.246 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.24 Water bridges: B:T.52, B:R.55, B:A.239

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 3 residues within 4Å: Chain B: M.51, R.55, E.80 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Short Chain Dehydrogenase from Shigella flexneri. To be Published

Release Date

2008-09-23

Peptides

Short-chain dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Short-chain dehydrogenase