SMTL ID : 3e9s.1

A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x TTT: 5-AMINO-2-METHYL-N-[(1R)-1-NAPHTHALEN-1-YLETHYL]BENZAMIDE(Non-covalent)

TTT.1: 10 residues within 4Å: Chain A: L.165, G.166, D.167, P.250, P.251, Y.267, Y.271, Q.272, Y.276, T.304 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.167, A:P.250, A:P.251, A:Y.267, A:Y.267, A:Q.272, A:Q.272, A:T.304 Hydrogen bonds: A:D.167, A:D.167, A:Y.271, A:Q.272 pi-Stacking: A:Y.271, A:Y.271, A:Y.271

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.192, C.195, C.227, C.229, G.230 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.192, A:C.195, A:C.227, A:C.229

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: F.130, Q.136 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: F.261, L.262, Y.308, K.309 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mesecar, A.D. et al., A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication. To be published

Release Date

2008-10-07

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 3