SMTL ID : 3e9y.2 (1 other biounit)

Arabidopsis thaliana acetohydroxyacid synthase in complex with monosulfuron

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x 1MS: N-[(4-methylpyrimidin-2-yl)carbamoyl]-2-nitrobenzenesulfonamide(Non-covalent)

1MS.1: 14 residues within 4Å: Chain A: D.290, R.291, M.484, W.488, S.567 Chain D: G.35, A.36, S.82, V.110, P.111, M.114, A.119, F.120, K.170 14 PLIP interactions: 7 interactions with chain D, 7 interactions with chain A Hydrophobic interactions: D:V.110, D:A.119, D:F.120, A:W.488 Hydrogen bonds: D:G.35, D:K.170, D:K.170, D:K.170, A:R.291, A:R.291, A:S.567 pi-Stacking: A:W.488, A:W.488 pi-Cation interactions: A:R.291 1MS.6: 14 residues within 4Å: Chain B: D.290, R.291, M.484, W.488, S.567 Chain C: G.35, A.36, S.82, V.110, P.111, M.114, A.119, F.120, K.170 14 PLIP interactions: 7 interactions with chain C, 7 interactions with chain B Hydrophobic interactions: C:V.110, C:A.119, C:F.120, B:W.488 Hydrogen bonds: C:G.35, C:K.170, C:K.170, C:K.170, B:R.291, B:R.291, B:S.567 pi-Stacking: B:W.488, B:W.488 pi-Cation interactions: B:R.291 1MS.11: 14 residues within 4Å: Chain B: G.35, A.36, S.82, V.110, P.111, M.114, A.119, F.120, K.170 Chain C: D.290, R.291, M.484, W.488, S.567 14 PLIP interactions: 7 interactions with chain B, 7 interactions with chain C Hydrophobic interactions: B:V.110, B:A.119, B:F.120, C:W.488 Hydrogen bonds: B:G.35, B:K.170, B:K.170, B:K.170, C:R.291, C:R.291, C:S.567 pi-Stacking: C:W.488, C:W.488 pi-Cation interactions: C:R.291 1MS.16: 14 residues within 4Å: Chain A: G.35, A.36, S.82, V.110, P.111, M.114, A.119, F.120, K.170 Chain D: D.290, R.291, M.484, W.488, S.567 14 PLIP interactions: 7 interactions with chain D, 7 interactions with chain A Hydrophobic interactions: D:W.488, A:V.110, A:A.119, A:F.120 Hydrogen bonds: D:R.291, D:R.291, D:S.567, A:G.35, A:K.170, A:K.170, A:K.170 pi-Stacking: D:W.488, D:W.488 pi-Cation interactions: D:R.291

4 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.2: 8 residues within 4Å: Chain A: K.134, H.135, L.155, L.187, P.188, G.189, Y.190 Chain C: M.140 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.155, A:Y.190 Hydrogen bonds: A:G.189, A:Y.190 NHE.7: 8 residues within 4Å: Chain B: K.134, H.135, L.155, L.187, P.188, G.189, Y.190 Chain D: M.140 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.155, B:Y.190 Hydrogen bonds: B:G.189, B:Y.190 NHE.12: 8 residues within 4Å: Chain A: M.140 Chain C: K.134, H.135, L.155, L.187, P.188, G.189, Y.190 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.155, C:Y.190 Hydrogen bonds: C:G.189, C:Y.190 NHE.17: 8 residues within 4Å: Chain B: M.140 Chain D: K.134, H.135, L.155, L.187, P.188, G.189, Y.190 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.155, D:Y.190 Hydrogen bonds: D:G.189, D:Y.190

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.452, N.479, H.481 Ligands: TDM.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.452, A:H.481 MG.8: 4 residues within 4Å: Chain B: D.452, N.479, H.481 Ligands: TDM.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.452, B:H.481 MG.13: 4 residues within 4Å: Chain C: D.452, N.479, H.481 Ligands: TDM.14 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.452, C:H.481 MG.18: 4 residues within 4Å: Chain D: D.452, N.479, H.481 Ligands: TDM.19 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.452, D:H.481

4 x TDM: 2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-HYDROXYETHYLIDENE)-4-METHYL-2,3-DIHYDRO-1,3-THIAZOL-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

TDM.4: 27 residues within 4Å: Chain A: V.399, G.400, Q.401, H.402, G.425, M.427, G.451, D.452, G.453, S.454, N.479, H.481, L.482, G.483, M.484, V.485 Chain D: Y.32, P.33, G.34, G.35, E.58, T.81, P.84, N.88, Q.121 Ligands: MG.3, FAB.5 21 PLIP interactions: 17 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:V.399, A:M.427, A:L.482, A:L.482, A:V.485, D:Y.32, D:P.84 Hydrogen bonds: A:Q.401, A:H.402, A:G.425, A:M.427, A:G.451, A:G.453, A:S.454, A:N.479, A:G.483, A:M.484, D:G.35, D:Q.121 Salt bridges: A:H.402, A:H.402 TDM.9: 27 residues within 4Å: Chain B: V.399, G.400, Q.401, H.402, G.425, M.427, G.451, D.452, G.453, S.454, N.479, H.481, L.482, G.483, M.484, V.485 Chain C: Y.32, P.33, G.34, G.35, E.58, T.81, P.84, N.88, Q.121 Ligands: MG.8, FAB.10 21 PLIP interactions: 17 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:V.399, B:M.427, B:L.482, B:L.482, B:V.485, C:Y.32, C:P.84 Hydrogen bonds: B:Q.401, B:H.402, B:G.425, B:M.427, B:G.451, B:G.453, B:S.454, B:N.479, B:G.483, B:M.484, C:G.35, C:Q.121 Salt bridges: B:H.402, B:H.402 TDM.14: 27 residues within 4Å: Chain B: Y.32, P.33, G.34, G.35, E.58, T.81, P.84, N.88, Q.121 Chain C: V.399, G.400, Q.401, H.402, G.425, M.427, G.451, D.452, G.453, S.454, N.479, H.481, L.482, G.483, M.484, V.485 Ligands: MG.13, FAB.15 20 PLIP interactions: 16 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:V.399, C:M.427, C:L.482, C:L.482, C:V.485, B:Y.32, B:P.84 Hydrogen bonds: C:Q.401, C:H.402, C:G.425, C:M.427, C:G.451, C:G.453, C:S.454, C:G.483, C:M.484, B:G.35, B:Q.121 Salt bridges: C:H.402, C:H.402 TDM.19: 27 residues within 4Å: Chain A: Y.32, P.33, G.34, G.35, E.58, T.81, P.84, N.88, Q.121 Chain D: V.399, G.400, Q.401, H.402, G.425, M.427, G.451, D.452, G.453, S.454, N.479, H.481, L.482, G.483, M.484, V.485 Ligands: MG.18, FAB.20 20 PLIP interactions: 16 interactions with chain D, 4 interactions with chain A Hydrophobic interactions: D:V.399, D:M.427, D:L.482, D:L.482, D:V.485, A:Y.32, A:P.84 Hydrogen bonds: D:Q.401, D:H.402, D:G.425, D:M.427, D:G.451, D:G.453, D:S.454, D:G.483, D:M.484, A:G.35, A:Q.121 Salt bridges: D:H.402, D:H.402

4 x FAB: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE(Non-covalent)

FAB.5: 36 residues within 4Å: Chain A: L.98, R.160, G.221, G.222, G.223, T.245, L.246, M.247, M.262, L.263, G.264, M.265, H.266, G.285, V.286, R.287, D.289, R.291, V.292, I.308, D.309, I.310, D.311, E.314, G.327, D.328, V.329, V.399, Q.403, M.404, S.421, G.422, G.423, G.425 Chain D: F.120 Ligands: TDM.4 23 PLIP interactions: 21 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:V.399, D:F.120 Hydrogen bonds: A:L.98, A:R.160, A:G.222, A:T.245, A:L.246, A:L.263, A:M.265, A:H.266, A:V.286, A:R.287, A:D.289, A:I.310, A:D.311, A:D.328, A:V.329, A:G.422 Water bridges: A:D.99, A:R.160, A:R.287 Salt bridges: A:R.287 pi-Stacking: D:F.120 FAB.10: 36 residues within 4Å: Chain B: L.98, R.160, G.221, G.222, G.223, T.245, L.246, M.247, M.262, L.263, G.264, M.265, H.266, G.285, V.286, R.287, D.289, R.291, V.292, I.308, D.309, I.310, D.311, E.314, G.327, D.328, V.329, V.399, Q.403, M.404, S.421, G.422, G.423, G.425 Chain C: F.120 Ligands: TDM.9 23 PLIP interactions: 21 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:V.399, C:F.120 Hydrogen bonds: B:L.98, B:R.160, B:G.222, B:T.245, B:L.246, B:L.263, B:M.265, B:H.266, B:V.286, B:R.287, B:D.289, B:I.310, B:D.311, B:D.328, B:V.329, B:G.422 Water bridges: B:D.99, B:R.160, B:R.287 Salt bridges: B:R.287 pi-Stacking: C:F.120 FAB.15: 36 residues within 4Å: Chain B: F.120 Chain C: L.98, R.160, G.221, G.222, G.223, T.245, L.246, M.247, M.262, L.263, G.264, M.265, H.266, G.285, V.286, R.287, D.289, R.291, V.292, I.308, D.309, I.310, D.311, E.314, G.327, D.328, V.329, V.399, Q.403, M.404, S.421, G.422, G.423, G.425 Ligands: TDM.14 24 PLIP interactions: 22 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:V.399, B:F.120 Hydrogen bonds: C:L.98, C:R.160, C:G.222, C:T.245, C:T.245, C:L.246, C:L.263, C:M.265, C:H.266, C:V.286, C:R.287, C:I.310, C:D.311, C:D.328, C:D.328, C:V.329, C:G.422 Water bridges: C:R.160, C:R.287, C:R.287 Salt bridges: C:R.287 pi-Stacking: B:F.120 FAB.20: 36 residues within 4Å: Chain A: F.120 Chain D: L.98, R.160, G.221, G.222, G.223, T.245, L.246, M.247, M.262, L.263, G.264, M.265, H.266, G.285, V.286, R.287, D.289, R.291, V.292, I.308, D.309, I.310, D.311, E.314, G.327, D.328, V.329, V.399, Q.403, M.404, S.421, G.422, G.423, G.425 Ligands: TDM.19 24 PLIP interactions: 22 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:V.399, A:F.120 Hydrogen bonds: D:L.98, D:R.160, D:G.222, D:T.245, D:T.245, D:L.246, D:L.263, D:M.265, D:H.266, D:V.286, D:R.287, D:I.310, D:D.311, D:D.328, D:D.328, D:V.329, D:G.422 Water bridges: D:R.160, D:R.287, D:R.287 Salt bridges: D:R.287 pi-Stacking: A:F.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J.-G. et al., Crystal structures of two novel sulfonylurea herbicides in complex with Arabidopsis thaliana acetohydroxyacid synthase. Febs J. (2009)

Release Date

2009-03-31

Peptides

Acetolactate synthase, chloroplastic: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Acetolactate synthase, chloroplastic

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