- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GA4: GIBBERELLIN A4(Non-covalent)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 12 residues within 4Å:- Chain A: L.22, N.25, F.26, S.29, Y.30, L.48, D.49, R.50
- Chain B: N.25, R.50
- Ligands: MPD.8, NO3.11
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.22, A:F.26, A:Y.30
- Hydrogen bonds: A:R.50, A:R.50, B:R.50
MPD.8: 12 residues within 4Å:- Chain A: N.25, R.50
- Chain B: L.22, N.25, F.26, S.29, Y.30, L.48, D.49, R.50
- Ligands: MPD.2, NO3.6
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.22, B:N.25, B:F.26, B:Y.30
- Hydrogen bonds: B:R.50, B:R.50, A:R.50
- 7 x NO3: NITRATE ION(Non-functional Binders)
NO3.3: 2 residues within 4Å:- Chain A: R.34, W.252
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.34, A:R.34, A:Q.248
NO3.4: 3 residues within 4Å:- Chain A: T.230, D.263, R.264
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.264, A:R.264, A:R.264
NO3.5: 6 residues within 4Å:- Chain A: L.22, R.50, L.329, L.330
- Chain B: L.48
- Ligands: NO3.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.50
NO3.6: 8 residues within 4Å:- Chain A: H.18, L.22, R.50
- Chain B: N.25, S.29, L.48
- Ligands: NO3.5, MPD.8
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.29, B:S.29, A:R.50, A:R.50
NO3.9: 3 residues within 4Å:- Chain B: R.34, Q.248, W.252
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.34, B:Q.248
NO3.10: 3 residues within 4Å:- Chain B: T.230, D.263, R.264
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.264, B:R.264, B:R.264
NO3.11: 7 residues within 4Å:- Chain A: N.25, S.29
- Chain B: H.18, L.22, R.50
- Ligands: MPD.2, PO4.12
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.50, B:R.50, A:S.29, A:S.29
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shimada, A. et al., Structural basis for gibberellin recognition by its receptor GID1. Nature (2008)
- Release Date
- 2008-11-25
- Peptides
- Gibberellin receptor GID1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GA4: GIBBERELLIN A4(Non-covalent)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 7 x NO3: NITRATE ION(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shimada, A. et al., Structural basis for gibberellin recognition by its receptor GID1. Nature (2008)
- Release Date
- 2008-11-25
- Peptides
- Gibberellin receptor GID1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B