SMTL ID : 3ecp.1

Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: V.69, S.70, A.71, E.72, D.347, E.350 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.69, A:S.70, A:A.71, A:E.72, A:E.72, A:R.351 GOL.2: 4 residues within 4Å: Chain A: R.104, D.119, K.120, S.121 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.104, A:R.104, A:K.120, A:K.120, A:S.121, A:S.121 Water bridges: A:S.121 GOL.3: 4 residues within 4Å: Chain A: E.146, W.148, E.161, K.164 No protein-ligand interaction detected (PLIP) GOL.4: 6 residues within 4Å: Chain D: V.69, S.70, A.71, E.72, D.347, E.350 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:V.69, D:S.70, D:A.71, D:E.72, D:R.351 GOL.5: 4 residues within 4Å: Chain D: R.104, D.119, K.120, S.121 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:R.104, D:R.104, D:K.120, D:K.120, D:S.121, D:S.121 Water bridges: D:D.119, D:S.121 GOL.6: 4 residues within 4Å: Chain D: E.146, W.148, E.161, K.164 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klenchin, V.A. et al., Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif. Nucleic Acids Res. (2008)

Release Date

2008-10-21

Peptides

Tn5 transposase: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

Tn5 transposase