- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BGC- BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 2 x GLC- GLC- GLC- GLC- GLC- GLC: Cyclohexakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)
GLC-GLC-GLC-GLC-GLC-GLC.2: 25 residues within 4Å:- Chain A: H.181, Y.183, H.223, H.251, R.253, F.274, V.275, M.278, R.309, D.311, T.312, Y.315, Q.340, W.342, H.417, D.418, R.464, D.466, R.470
- Ligands: BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.464, A:D.466
GLC-GLC-GLC-GLC-GLC-GLC.4: 25 residues within 4Å:- Chain B: H.181, Y.183, H.223, H.251, R.253, F.274, V.275, M.278, R.309, D.311, T.312, Y.315, Q.340, W.342, H.417, D.418, R.464, D.466, R.470
- Ligands: BGC-BGC-BGC-BGC-BGC-BGC.3, BGC-BGC-BGC-BGC-BGC-BGC.3, BGC-BGC-BGC-BGC-BGC-BGC.3, BGC-BGC-BGC-BGC-BGC-BGC.3, BGC-BGC-BGC-BGC-BGC-BGC.3, BGC-BGC-BGC-BGC-BGC-BGC.3
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.253, B:R.464, B:R.464
- Water bridges: B:R.253
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: S.222, T.270, D.280, Y.315
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.222, A:T.270, A:Y.315, H2O.1, H2O.3
CA.6: 6 residues within 4Å:- Chain A: N.119, D.121, N.124, D.125, G.144, D.146
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.121, A:D.125, A:G.144, A:D.146, H2O.4
CA.9: 4 residues within 4Å:- Chain B: S.222, T.270, D.280, Y.315
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.222, B:D.280, B:D.280, H2O.30, H2O.30
CA.10: 6 residues within 4Å:- Chain B: N.119, D.121, N.124, D.125, G.144, D.146
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.121, B:D.125, B:G.144, B:D.146, H2O.31
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 10 residues within 4Å:- Chain A: I.112, M.113, R.116, F.117, R.421, Y.450, S.451, R.470, R.471, F.473
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:M.113, A:R.421, A:S.451, A:S.451, A:R.471
GOL.8: 10 residues within 4Å:- Chain A: A.118, N.119, G.120, G.149, D.152, H.153, G.475, G.476, W.477, A.478
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.152, A:D.152, A:G.475
- Water bridges: A:N.119, A:A.478
GOL.11: 10 residues within 4Å:- Chain B: I.112, M.113, R.116, F.117, R.421, Y.450, S.451, R.470, R.471, F.473
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:M.113, B:R.421, B:S.451, B:S.451, B:R.471
GOL.12: 9 residues within 4Å:- Chain B: N.119, G.120, G.149, D.152, H.153, G.475, G.476, W.477, A.478
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.152, B:G.475
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buedenbender, S. et al., Structural base for enzymatic cyclodextrin hydrolysis. J.Mol.Biol. (2009)
- Release Date
- 2009-03-03
- Peptides
- Cyclomaltodextrinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BGC- BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 2 x GLC- GLC- GLC- GLC- GLC- GLC: Cyclohexakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buedenbender, S. et al., Structural base for enzymatic cyclodextrin hydrolysis. J.Mol.Biol. (2009)
- Release Date
- 2009-03-03
- Peptides
- Cyclomaltodextrinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B