SMTL ID : 3edn.1

Crystal structure of the Bacillus anthracis phenazine biosynthesis protein, PhzF family

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

15 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: F.12, N.20, C.73, G.74, H.75, V.228, T.229, G.230, T.231 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.20, A:G.74, A:H.75, A:G.230, A:T.231 Water bridges: A:H.75, A:T.231 Salt bridges: A:H.75 SO4.2: 3 residues within 4Å: Chain A: F.7, R.87, E.294 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.87, A:Y.291 Salt bridges: A:R.87 SO4.3: 2 residues within 4Å: Chain A: R.38, K.42 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.38 Salt bridges: A:R.38, A:K.42 SO4.4: 3 residues within 4Å: Chain A: N.162, W.163, N.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.163, A:N.194 SO4.5: 3 residues within 4Å: Chain A: T.223, I.224, E.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.224, A:E.225, A:E.225 SO4.6: 3 residues within 4Å: Chain A: D.206, E.207, K.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.207, A:K.208 Water bridges: A:R.267 Salt bridges: A:K.208 SO4.7: 2 residues within 4Å: Chain A: F.248, D.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.249 Water bridges: A:E.251 SO4.8: 1 residues within 4Å: Chain A: E.86 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.86, A:E.86 SO4.11: 8 residues within 4Å: Chain B: F.12, C.73, G.74, H.75, V.228, T.229, G.230, T.231 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.74, B:H.75, B:G.230, B:T.231 Water bridges: B:N.20, B:H.75, B:H.75, B:N.162, B:D.226, B:D.226 Salt bridges: B:H.75 SO4.12: 5 residues within 4Å: Chain B: S.196, H.215, S.217, S.218, A.221 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.196, B:S.196, B:S.218 Water bridges: B:N.194, B:S.196, B:H.215, B:H.215, B:S.218, B:T.223 Salt bridges: B:H.215 SO4.13: 6 residues within 4Å: Chain A: E.33, R.62, K.101 Chain B: T.32, E.33, E.34 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:T.32, B:E.33, B:E.34 Water bridges: A:K.101, A:K.101 Salt bridges: A:R.62, A:K.101 SO4.14: 2 residues within 4Å: Chain B: K.129, D.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.130 Water bridges: B:F.128 SO4.15: 3 residues within 4Å: Chain B: T.223, I.224, E.225 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.224, B:E.225 Water bridges: B:E.225 SO4.16: 1 residues within 4Å: Chain B: K.264 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.264 SO4.17: 2 residues within 4Å: Chain B: Q.108, K.120 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.120, B:K.120 Salt bridges: B:K.120

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.9: 14 residues within 4Å: Chain A: L.31, T.32, E.33, M.36, L.52, R.60, R.62 Chain B: L.31, E.33, M.36, L.52, R.60, R.62 Ligands: MG.10 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Water bridges: B:R.60, B:R.60, A:R.60, A:R.60, A:R.60 Salt bridges: B:R.60, B:R.62, A:R.60, A:R.62

1 x MG: MAGNESIUM ION(Non-covalent)

MG.10: 4 residues within 4Å: Chain A: D.29 Chain B: D.29, R.60 Ligands: SIN.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, S.M. et al., Crystal structure of the Bacillus anthracis phenazine biosynthesis protein, PhzF family. To be Published

Release Date

2008-10-07

Peptides

Phenazine biosynthesis protein, PhzF family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phenazine biosynthesis protein, PhzF family