SMTL ID : 3eeu.1

Structure of the RNA pyrophosphohydrolase BdRppH in complex with Holmium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HO: HOLMIUM ATOM(Non-covalent)

HO.1: 2 residues within 4Å: Chain A: E.70, E.73 Ligand excluded by PLIP HO.5: 2 residues within 4Å: Chain B: E.70, E.73 Ligand excluded by PLIP

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: K.31, K.34, W.121 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.31, A:K.34 Water bridges: A:W.121 Salt bridges: A:K.31, A:K.34 ACT.3: 3 residues within 4Å: Chain A: R.30, K.31, D.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.32 Water bridges: A:G.33

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: E.51, F.52, N.136 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messing, S.A. et al., Structure and Biological Function of the RNA Pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus. Structure (2009)

Release Date

2009-03-24

Peptides

Probable pyrophosphohydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable pyrophosphohydrolase

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