SMTL ID : 3efh.2 (2 other biounits)

Crystal structure of human phosphoribosyl pyrophosphate synthetase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: D.224, T.225, C.226, G.227, T.228 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.224, A:T.225, A:T.225, A:T.225, A:C.226, A:G.227, A:T.228, A:T.228, A:T.228 SO4.2: 6 residues within 4Å: Chain A: S.47, R.49 Chain B: E.307, S.308, V.309, S.310 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:V.309, B:S.310, B:S.310, A:S.47 Water bridges: A:V.48, A:R.49 Salt bridges: A:R.49 SO4.3: 4 residues within 4Å: Chain A: S.132, Q.135, N.144, Y.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.132, A:N.144, A:Y.146 SO4.4: 5 residues within 4Å: Chain B: D.224, T.225, C.226, G.227, T.228 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.224, B:T.225, B:T.225, B:T.225, B:C.226, B:G.227, B:T.228, B:T.228, B:T.228 SO4.5: 6 residues within 4Å: Chain B: S.47, R.49 Chain C: E.307, S.308, V.309, S.310 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:S.47, C:V.309, C:S.310, C:S.310 Water bridges: B:V.48, B:R.49 Salt bridges: B:R.49 SO4.6: 4 residues within 4Å: Chain B: S.132, Q.135, N.144, Y.146 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.132, B:N.144, B:Y.146 SO4.7: 5 residues within 4Å: Chain C: D.224, T.225, C.226, G.227, T.228 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.224, C:T.225, C:T.225, C:T.225, C:C.226, C:G.227, C:T.228, C:T.228, C:T.228 SO4.8: 6 residues within 4Å: Chain A: E.307, S.308, V.309, S.310 Chain C: S.47, R.49 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:S.47, A:V.309, A:S.310, A:S.310 Water bridges: C:V.48, C:R.49 Salt bridges: C:R.49 SO4.9: 4 residues within 4Å: Chain C: S.132, Q.135, N.144, Y.146 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.132, C:N.144, C:Y.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, X. et al., Crystal structure of human phosphoribosyl pyrophosphate synthetase 1. To be Published

Release Date

2008-09-30

Peptides

Ribose-phosphate pyrophosphokinase 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Ribose-phosphate pyrophosphokinase 1

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