SMTL ID : 3efj.1 (2 other biounits)

Structure of c-Met with pyrimidone inhibitor 7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x MT3: 2-benzyl-5-{4-[(6,7-dimethoxyquinolin-4-yl)oxy]-3-fluorophenyl}-3-methylpyrimidin-4(3H)-one(Non-covalent)

MT3.1: 19 residues within 4Å: Chain A: I.38, F.43, V.46, A.62, K.64, F.78, E.81, G.82, M.85, L.94, L.96, V.109, L.111, P.112, Y.113, M.114, G.117, M.165, F.177 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.62, A:K.64, A:F.78, A:F.78, A:E.81, A:L.94, A:L.96, A:V.109, A:L.111, A:M.114 Hydrogen bonds: A:K.64, A:M.114 pi-Stacking: A:F.177 MT3.2: 20 residues within 4Å: Chain B: I.38, G.39, F.43, V.46, A.62, K.64, F.78, E.81, G.82, M.85, L.94, L.96, V.109, L.111, P.112, Y.113, M.114, K.115, G.117, M.165 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.38, B:A.62, B:F.78, B:F.78, B:E.81, B:L.94, B:L.96, B:V.109, B:L.111, B:M.114 Hydrogen bonds: B:M.114 Water bridges: B:D.118, B:D.176 pi-Stacking: B:F.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'Angelo, N.D. et al., Design, synthesis, and biological evaluation of potent c-Met inhibitors. J.Med.Chem. (2008)

Release Date

2008-10-07

Peptides

Hepatocyte growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hepatocyte growth factor receptor

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