SMTL ID : 3efo.1

Crystal Structure of the mammalian COPII-coat protein Sec23/24 bound to the transport signal sequence of syntaxin 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-oligomer

Ligands

1 x ASP- VAL- ALA- ILE- ASP- MET- MET: Peptide(Non-covalent)

ASP-VAL-ALA-ILE-ASP-MET-MET.1: 13 residues within 4Å: Chain B: A.1, M.2, Y.558, S.569, Q.570, L.571, I.572, L.573, P.574, D.575, K.578, L.758, H.762 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:M.2, B:L.571, B:I.572, B:K.578, B:L.758 Hydrogen bonds: B:S.569, B:Q.570, B:L.571, B:L.571, B:L.573, B:L.573, B:D.575, B:D.575

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.61, C.66, C.85, C.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.61, A:C.66, A:C.85, A:C.88 ZN.3: 4 residues within 4Å: Chain B: C.101, C.104, C.123, C.126 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.101, B:C.104, B:C.123, B:C.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mancias, J.D. et al., Structural basis of cargo membrane protein discrimination by the human COPII coat machinery. Embo J. (2008)

Release Date

2008-10-21

Peptides

Protein transport protein Sec23A: A
SEC24 related gene family, member D: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein transport protein Sec23A

SEC24 related gene family, member D

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