SMTL ID : 3efp.2 (1 other biounit)

Crystal structure of the Escherichia coli twin arginine leader peptide binding protein DmsD in a monomeric form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Q.11, D.12, Q.192, Q.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.11, A:Q.192 Water bridges: A:Q.192 GOL.4: 5 residues within 4Å: Chain A: A.35, V.38, A.39, T.42, H.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.39, A:T.42

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 2 residues within 4Å: Chain A: W.157, H.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.157 TRS.3: 3 residues within 4Å: Chain A: Q.10, Q.11, D.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.11, A:D.12 Water bridges: A:N.13

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: R.147 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Q.10, A.143 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 4 residues within 4Å: Chain A: R.147, Q.148, T.149, E.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.148, A:T.149, A:T.149, A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stevens, C.M. et al., Structural analysis of a monomeric form of the twin-arginine leader peptide binding chaperone Escherichia coli DmsD. J.Mol.Biol. (2009)

Release Date

2009-04-07

Peptides

Twin-arginine leader-binding protein dmsD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Twin-arginine leader-binding protein dmsD

Related Entries With Identical Sequence