SMTL ID : 3eg5.1

Crystal structure of MDIA1-TSH GBD-FH3 in complex with CDC42-GMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 20 residues within 4Å: Chain A: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, F.28, Y.32, P.34, T.35, G.60, Q.116, D.118, L.119, S.158, A.159, L.160 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:A.13, A:V.14, A:G.15, A:K.16, A:K.16, A:T.17, A:C.18, A:T.35, A:T.35, A:T.58, A:G.60, A:Q.116, A:Q.116, A:A.159, A:L.160 Water bridges: A:T.17, A:L.19, A:V.33 Salt bridges: A:D.118 pi-Stacking: A:F.28, A:F.28 GNP.3: 21 residues within 4Å: Chain C: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, F.28, Y.32, P.34, T.35, A.59, G.60, Q.116, D.118, L.119, S.158, A.159, L.160 Ligands: MG.4 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:A.13, C:V.14, C:G.15, C:K.16, C:K.16, C:T.17, C:C.18, C:Y.32, C:T.35, C:T.35, C:T.35, C:T.58, C:G.60, C:Q.116, C:Q.116, C:A.159, C:L.160 Water bridges: C:T.17, C:L.19 Salt bridges: C:D.118 pi-Stacking: C:F.28, C:F.28

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.17, T.35, D.57 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.17, A:T.35, H2O.1, H2O.1 MG.4: 4 residues within 4Å: Chain C: T.17, T.35, D.57 Ligands: GNP.3 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:T.17, C:T.35, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammers, M. et al., Specificity of Interactions between mDia Isoforms and Rho Proteins. J.Biol.Chem. (2008)

Release Date

2008-10-14

Peptides

Cell division control protein 42 homolog: AC
Protein diaphanous homolog 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Cell division control protein 42 homolog

Protein diaphanous homolog 1