- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PL6: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: K.81, S.92, A.100, N.313, Q.316, A.317, L.320
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.81, A:S.92
- Water bridges: A:S.92, A:N.313
GOL.3: 10 residues within 4Å:- Chain A: F.111, Y.112, S.238, A.241, R.250, S.251, E.264, A.266, Y.271, W.281
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.238, A:S.238, A:Y.271, A:Y.271
GOL.4: 7 residues within 4Å:- Chain A: K.109, T.110, F.111, Y.112, G.113, L.115, E.254
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.113, A:E.254
- Water bridges: A:T.110
GOL.8: 7 residues within 4Å:- Chain B: K.81, S.92, A.100, N.313, Q.316, A.317, L.320
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.81, B:K.81, B:S.92
- Water bridges: B:S.92, B:S.92, B:N.313
GOL.9: 10 residues within 4Å:- Chain B: F.111, Y.112, S.238, A.241, R.250, S.251, E.264, A.266, Y.271, W.281
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.112, B:S.238, B:R.250, B:Y.271
GOL.10: 5 residues within 4Å:- Chain B: F.111, Y.112, G.113, L.115, E.254
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.254
- Water bridges: B:F.111, B:E.254
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: H.428, H.429, H.430
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.428, A:H.430
- Salt bridges: A:H.429
SO4.6: 4 residues within 4Å:- Chain A: K.101, R.104, D.119, D.120
4 PLIP interactions:4 interactions with chain A- Water bridges: A:D.119, A:D.120
- Salt bridges: A:K.101, A:R.104
SO4.11: 4 residues within 4Å:- Chain B: K.101, R.104, D.119, D.120
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:K.101, B:R.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Watanabe, N. et al., Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana. J.Mol.Biol. (2008)
- Release Date
- 2008-10-14
- Peptides
- LL-diaminopimelate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PL6: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-glutamic acid(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Watanabe, N. et al., Mechanism of substrate recognition and PLP-induced conformational changes in LL-diaminopimelate aminotransferase from Arabidopsis thaliana. J.Mol.Biol. (2008)
- Release Date
- 2008-10-14
- Peptides
- LL-diaminopimelate aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B