SMTL ID : 3eih.1 (2 other biounits)

Crystal structure of S.cerevisiae Vps4 in the presence of ATPgammaS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

monomer

Ligands

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 15 residues within 4Å: Chain A: D.37, V.38, A.39, L.41, P.78, G.79, T.80, G.81, K.82, S.83, Y.84, N.180, G.239, S.240 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:A.39, A:A.39, A:G.79, A:T.80, A:T.80, A:G.81, A:K.82, A:S.83, A:S.83, A:Y.84, A:S.240 Salt bridges: A:K.82

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.83, D.135 Ligands: AGS.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.83, A:D.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonciarz, M.D. et al., Biochemical and structural studies of yeast vps4 oligomerization. J.Mol.Biol. (2008)

Release Date

2008-09-30

Peptides

Vacuolar protein sorting-associated protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vacuolar protein sorting-associated protein 4

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