SMTL ID : 3eik.1

double stranded DNA binding protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Y.160, Y.173, M.175, V.176, K.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.173, A:V.176, A:K.177 EDO.2: 8 residues within 4Å: Chain A: N.137, V.181, T.193, G.194 Chain B: Y.160, C.161, S.162, I.172 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.137, A:V.181, A:T.193, A:T.193, B:C.161 EDO.3: 8 residues within 4Å: Chain A: A.154, S.158, C.161, S.162, Y.163, E.164 Chain B: V.49, N.137 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.158, A:Y.163, A:E.164, B:N.137 EDO.4: 9 residues within 4Å: Chain A: Y.160, C.161, S.162, I.172, R.174 Chain B: N.137, V.181, T.193, G.194 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.137, B:V.181, B:T.193, A:C.161 EDO.5: 8 residues within 4Å: Chain A: V.49, N.137 Chain B: A.154, S.158, C.161, S.162, Y.163, E.164 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.158, B:Y.163, B:E.164, B:E.164, A:N.137 EDO.6: 8 residues within 4Å: Chain A: F.168, P.169, G.170, I.172 Chain B: F.168, P.169, G.170, I.172 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.170, A:G.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, S. et al., structural studies of ecTBP. To be Published

Release Date

2009-09-22

Peptides

TATA-box-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TATA-box-binding protein