SMTL ID : 3ej5.1

complex of Ricin A chain and pyrimidine-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x EJ5: 4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid(Non-covalent)

EJ5.1: 12 residues within 4Å: Chain A: N.74, A.75, Y.76, V.77, F.89, G.117, Y.119, I.168, S.172, E.173, R.176, E.204 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.76, A:Y.119, A:I.168 Hydrogen bonds: A:N.74, A:V.77, A:V.77, A:G.117, A:Y.119, A:S.172, A:R.176, A:R.176 pi-Stacking: A:Y.76 pi-Cation interactions: A:Y.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, Y. et al., The X-ray structure of ricin A chain with a novel inhibitor. Arch.Biochem.Biophys. (2009)

Release Date

2009-04-07

Peptides

Ricin A chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Ricin A chain