SMTL ID : 3ejv.1

Crystal structure of a cystatin-like protein (saro_2766) from novosphingobium aromaticivorans dsm at 1.40 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-trimer

Ligands

3 x UNL: UNKNOWN LIGAND

UNL.1: 9 residues within 4Å: Chain A: Y.35, H.39, M.47, A.82, V.83, M.87, Y.152, I.170 Ligands: EDO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.35, A:Y.152, A:Y.152 Water bridges: A:H.39, A:E.148 UNL.7: 9 residues within 4Å: Chain B: Y.35, H.39, M.47, A.82, V.83, M.87, Y.152, I.170 Ligands: EDO.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.35, B:Y.152 Water bridges: B:H.39, B:E.148 UNL.13: 9 residues within 4Å: Chain C: Y.35, H.39, M.47, A.82, V.83, M.87, Y.152, I.170 Ligands: EDO.15 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.35, C:Y.152, C:Y.152 Water bridges: C:H.39, C:E.148

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: P.146, I.147, L.174 Chain B: A.140, G.142, I.144 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.140, B:I.144 Water bridges: B:A.140 EDO.3: 6 residues within 4Å: Chain A: I.59, M.86, M.87, E.148, H.172 Ligands: UNL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.148 EDO.4: 6 residues within 4Å: Chain A: R.153, L.154, T.155, A.167, M.168, R.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.153, A:T.155 Water bridges: A:E.58 EDO.5: 3 residues within 4Å: Chain A: H.111, R.157, S.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.166 EDO.8: 6 residues within 4Å: Chain B: P.146, I.147, L.174 Chain C: A.140, G.142, I.144 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.140, C:I.144 Water bridges: C:A.140 EDO.9: 6 residues within 4Å: Chain B: I.59, M.86, M.87, E.148, H.172 Ligands: UNL.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.148 EDO.10: 6 residues within 4Å: Chain B: R.153, L.154, T.155, A.167, M.168, R.169 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.153, B:T.155 Water bridges: B:E.58 EDO.11: 3 residues within 4Å: Chain B: H.111, R.157, S.166 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.166 EDO.14: 6 residues within 4Å: Chain A: A.140, G.142, I.144 Chain C: P.146, I.147, L.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.140, A:I.144 Water bridges: A:A.140 EDO.15: 6 residues within 4Å: Chain C: I.59, M.86, M.87, E.148, H.172 Ligands: UNL.13 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.148 EDO.16: 6 residues within 4Å: Chain C: R.153, L.154, T.155, A.167, M.168, R.169 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.153, C:T.155 Water bridges: C:E.58 EDO.17: 3 residues within 4Å: Chain C: H.111, R.157, S.166 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.166

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 2 residues within 4Å: Chain A: P.134, T.135 No protein-ligand interaction detected (PLIP) PGE.12: 2 residues within 4Å: Chain B: P.134, T.135 No protein-ligand interaction detected (PLIP) PGE.18: 2 residues within 4Å: Chain C: P.134, T.135 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of protein of unknown function with a cystatin-like fold (YP_498036.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.40 A resolution. To be published

Release Date

2008-09-30

Peptides

uncharacterized protein with cystatin-like fold: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

uncharacterized protein with cystatin-like fold