SMTL ID : 3ele.1 (1 other biounit)

Crystal structure of Amino Transferase (RER070207001803) from Eubacterium rectale at 2.10 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 15 residues within 4Å: Chain A: G.107, A.108, A.109, F.134, Y.137, N.179, N.183, D.217, P.219, Y.220, S.245, S.247, K.248, R.256 Chain B: Y.72 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.183, A:Y.220 Hydrogen bonds: A:A.108, A:A.109, A:N.183, A:S.245, A:S.247, A:S.247 Salt bridges: A:K.248, A:R.256 pi-Stacking: A:F.134 PLP.4: 15 residues within 4Å: Chain A: Y.72 Chain B: G.107, A.108, A.109, F.134, Y.137, N.179, N.183, D.217, P.219, Y.220, S.245, S.247, K.248, R.256 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.134, B:N.183, B:Y.220 Hydrogen bonds: B:A.108, B:A.109, B:N.183, B:S.245, B:S.247, B:S.247, A:Y.72 Salt bridges: B:K.248, B:R.256 pi-Stacking: B:F.134

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: F.88, E.222, Y.244, Y.246, C.299, Q.300, G.301, A.302, T.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.300, A:G.301, A:G.301 Water bridges: A:Q.300 EDO.3: 3 residues within 4Å: Chain A: Y.24, R.28, E.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.24, A:E.354 EDO.6: 8 residues within 4Å: Chain B: F.88, E.222, Y.244, S.249, Q.300, G.301, A.302, T.303 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.301, B:A.302 Water bridges: B:Q.300, B:A.302, B:A.302 EDO.7: 5 residues within 4Å: Chain B: S.205, K.206, R.210, P.211, N.239 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.205, B:N.239 Water bridges: B:S.205 EDO.8: 3 residues within 4Å: Chain B: E.126, R.147, V.149 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.126, B:L.148 Water bridges: B:R.147 EDO.9: 5 residues within 4Å: Chain B: S.46, N.312, V.377, D.378, R.379 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.46, B:N.312, B:V.377, B:R.379 EDO.10: 6 residues within 4Å: Chain B: I.42, G.43, F.134, N.183, Y.335, R.372 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.43, B:N.183, B:R.372, B:R.372 EDO.11: 3 residues within 4Å: Chain B: N.170, A.171, H.172 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.171 EDO.12: 4 residues within 4Å: Chain B: P.387, E.390, K.391, K.394 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.387, B:K.394 EDO.13: 4 residues within 4Å: Chain B: Y.133, K.138, L.148, E.150 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.148 Water bridges: B:E.150 EDO.14: 4 residues within 4Å: Chain B: K.138, N.142, R.147 Ligands: CL.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.138 Water bridges: B:N.142, B:N.142

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain B: K.138, N.142, R.147, L.148 Ligands: EDO.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Amino Transferase (RER070207001803) from Eubacterium rectale at 2.10 A resolution. TO BE PUBLISHED

Release Date

2008-10-14

Peptides

Amino Transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amino Transferase

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