Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 3elz.2
(2 other biounits)
Crystal structure of Zebrafish Ileal Bile Acid-Bindin Protein complexed with cholic acid (crystal form A).
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
monomer
Ligands
5 x
CHD
:
CHOLIC ACID
(Non-covalent)
CHD.1:
16 residues within 4Å:
Chain A:
W.53
,
Q.55
,
F.67
,
M.75
,
E.76
,
T.77
,
V.78
,
V.87
,
L.94
,
I.96
,
Y.101
,
Q.103
,
T.105
Ligands:
CHD.2
,
CHD.4
,
CHD.5
14
PLIP interactions
:
14 interactions with chain A
Hydrophobic interactions:
A:W.53
,
A:F.67
,
A:F.67
,
A:V.87
,
A:I.96
,
A:Y.101
,
A:T.105
Hydrogen bonds:
A:W.53
,
A:Q.55
,
A:V.78
,
A:L.94
,
A:Y.101
,
A:T.105
Water bridges:
A:Q.103
CHD.2:
13 residues within 4Å:
Chain A:
Y.18
,
I.25
,
I.27
,
G.35
,
F.38
,
Y.57
,
P.58
,
V.78
,
L.127
,
R.129
Ligands:
CHD.1
,
CHD.3
,
CHD.5
13
PLIP interactions
:
13 interactions with chain A
Hydrophobic interactions:
A:I.25
,
A:I.27
,
A:F.38
,
A:F.38
,
A:Y.57
,
A:V.78
,
A:L.127
Hydrogen bonds:
A:Y.18
,
A:Y.18
,
A:Y.57
,
A:R.129
Water bridges:
A:Q.15
,
A:S.116
CHD.3:
6 residues within 4Å:
Chain A:
P.58
,
N.59
,
H.61
,
V.78
Ligands:
CHD.2
,
CHD.5
2
PLIP interactions
:
2 interactions with chain A
Hydrophobic interactions:
A:V.78
Hydrogen bonds:
A:P.58
CHD.4:
10 residues within 4Å:
Chain A:
I.25
,
T.77
,
K.81
,
K.82
,
F.83
,
F.98
,
Y.101
,
S.119
Ligands:
CHD.1
,
CHD.5
10
PLIP interactions
:
10 interactions with chain A
Hydrophobic interactions:
A:I.25
,
A:T.77
,
A:K.81
,
A:K.81
,
A:F.83
,
A:F.98
,
A:Y.101
,
A:Y.101
Hydrogen bonds:
A:K.82
,
A:S.119
CHD.5:
10 residues within 4Å:
Chain A:
P.28
,
V.31
,
T.77
,
V.78
,
G.79
,
K.81
Ligands:
CHD.1
,
CHD.2
,
CHD.3
,
CHD.4
5
PLIP interactions
:
5 interactions with chain A
Hydrophobic interactions:
A:V.31
Hydrogen bonds:
A:T.77
,
A:V.78
,
A:G.79
Salt bridges:
A:K.81
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Capaldi, S. et al., The X-Ray structure of zebrafish (Danio rerio) ileal bile acid-binding protein reveals the presence of binding sites on the surface of the protein molecule. J.Mol.Biol. (2009)
Release Date
2009-01-13
Peptides
ileal Bile Acid-Binding Protein:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
ileal Bile Acid-Binding Protein
Related Entries With Identical Sequence
3elx.1
|
3elz.1
|
3elz.3
|
3em0.1
|
3em0.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme