- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-functional Binders)
- 6 x DGI: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE(Non-covalent)
DGI.2: 11 residues within 4Å:- Chain A: K.14, Y.55, H.58, Y.63, N.67, R.91, T.97, R.108, I.115, N.118
- Ligands: MG.1
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:K.14, A:R.108, A:N.118
- Water bridges: A:K.14, A:Y.55, A:Y.63, A:Q.94, A:Q.94, A:T.97
- Salt bridges: A:H.58, A:R.91, A:R.108
- pi-Stacking: A:Y.63, A:Y.63
DGI.4: 11 residues within 4Å:- Chain B: K.14, Y.55, H.58, Y.63, N.67, R.91, T.97, R.108, I.115, N.118
- Ligands: MG.3
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:K.14, B:T.97, B:R.108, B:N.118
- Water bridges: B:K.14, B:Y.55, B:Y.63, B:R.91, B:R.91, B:R.91, B:Q.94
- Salt bridges: B:H.58, B:R.91, B:R.108
- pi-Stacking: B:Y.63, B:Y.63
DGI.6: 11 residues within 4Å:- Chain C: K.14, Y.55, H.58, Y.63, N.67, R.91, T.97, R.108, I.115, N.118
- Ligands: MG.5
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:K.14, C:R.108, C:N.118
- Water bridges: C:K.14, C:Y.55, C:Y.63, C:Q.94, C:Q.94, C:T.97
- Salt bridges: C:H.58, C:R.91, C:R.108
- pi-Stacking: C:Y.63, C:Y.63
DGI.8: 11 residues within 4Å:- Chain D: K.14, Y.55, H.58, Y.63, N.67, R.91, T.97, R.108, I.115, N.118
- Ligands: MG.7
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:K.14, D:T.97, D:R.108, D:N.118
- Water bridges: D:K.14, D:Y.55, D:Y.63, D:R.91, D:R.91, D:R.91, D:Q.94
- Salt bridges: D:H.58, D:R.91, D:R.108
- pi-Stacking: D:Y.63, D:Y.63
DGI.10: 11 residues within 4Å:- Chain E: K.14, Y.55, H.58, Y.63, N.67, R.91, T.97, R.108, I.115, N.118
- Ligands: MG.9
14 PLIP interactions:14 interactions with chain E- Hydrogen bonds: E:K.14, E:R.108, E:N.118
- Water bridges: E:K.14, E:Y.55, E:Y.63, E:Q.94, E:Q.94, E:T.97
- Salt bridges: E:H.58, E:R.91, E:R.108
- pi-Stacking: E:Y.63, E:Y.63
DGI.12: 11 residues within 4Å:- Chain F: K.14, Y.55, H.58, Y.63, N.67, R.91, T.97, R.108, I.115, N.118
- Ligands: MG.11
16 PLIP interactions:16 interactions with chain F- Hydrogen bonds: F:K.14, F:T.97, F:R.108, F:N.118
- Water bridges: F:K.14, F:Y.55, F:Y.63, F:R.91, F:R.91, F:R.91, F:Q.94
- Salt bridges: F:H.58, F:R.91, F:R.108
- pi-Stacking: F:Y.63, F:Y.63
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-11
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-functional Binders)
- 6 x DGI: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-11
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B