SMTL ID : 3en8.1

Crystal structure of NTF-2 like protein of unknown function (YP_553245.1) from BURKHOLDERIA XENOVORANS LB400 at 1.85 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.32, D.33 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.32, A:D.33, A:D.33, H2O.2 CA.5: 2 residues within 4Å: Chain B: D.32, D.33 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.32, B:D.33, B:D.33, H2O.7

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: I.35, V.104, H.105 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.104 Salt bridges: A:H.105 ACT.6: 3 residues within 4Å: Chain B: I.35, V.104, H.105 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.104 Water bridges: B:H.105, B:H.105 Salt bridges: B:H.105

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: N.50, A.53, L.54, H.57 Chain B: W.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.50 PEG.7: 5 residues within 4Å: Chain A: W.123 Chain B: N.50, A.53, L.54, H.57 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.50

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 7 residues within 4Å: Chain A: Y.38, P.89, A.90, F.110, D.112 Chain B: F.114, R.120 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:P.89, B:R.120 Water bridges: A:D.112 PG4.8: 7 residues within 4Å: Chain A: F.114, R.120 Chain B: Y.38, P.89, A.90, F.110, D.112 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:P.89, A:R.120 Water bridges: A:D.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of NTF-2 like protein of unknown function (YP_553245.1) from BURKHOLDERIA XENOVORANS LB400 at 1.85 A resolution. To be published

Release Date

2008-10-07

Peptides

uncharacterized NTF-2 like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

uncharacterized NTF-2 like protein