SMTL ID : 3enw.1

Substrate and inhibitor complexes of ribose 5-phosphate isomerase from Vibrio vulnificus YJ016

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 5RP: SUGAR (RIBULOSE-5-PHOSPHATE)(Non-covalent)

5RP.1: 13 residues within 4Å: Chain A: K.24, T.45, G.46, S.47, T.48, A.100, D.101, G.112, G.113, G.114, A.115, E.120, K.138 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.47, A:T.48, A:T.48, A:D.101, A:G.112, A:G.114, A:E.120, A:K.138 Water bridges: A:K.24, A:T.48, A:V.49, A:G.99 Salt bridges: A:K.24, A:K.138 5RP.2: 16 residues within 4Å: Chain B: K.24, T.45, G.46, S.47, T.48, D.98, G.99, A.100, D.101, K.111, G.112, G.113, G.114, A.115, E.120, K.138 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:S.47, B:T.48, B:G.99, B:D.101, B:K.111, B:G.112, B:G.114, B:E.120 Water bridges: B:K.24, B:K.24, B:K.24, B:T.48, B:T.48, B:V.49, B:G.99 Salt bridges: B:K.24, B:K.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, T.G. et al., Crystal structures of substrate and inhibitor complexes of ribose 5-phosphate isomerase A from Vibrio vulnificus YJ016. Mol.Cells (2009)

Release Date

2009-09-29

Peptides

Ribose-5-phosphate isomerase A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribose-5-phosphate isomerase A

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