- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x HPA: HYPOXANTHINE(Non-covalent)
- 6 x R1X: 1,4-anhydro-D-ribitol(Non-covalent)
R1X.2: 11 residues within 4Å:- Chain A: V.66, R.88, S.91, Y.160, E.182, M.183, E.184
- Chain B: H.7, R.45
- Ligands: HPA.1, ART.3
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:H.7, B:R.45, A:M.183, A:E.184, A:E.184
R1X.13: 11 residues within 4Å:- Chain A: H.7, R.45
- Chain B: V.66, R.88, S.91, Y.160, E.182, M.183, E.184
- Ligands: HPA.12, ART.14
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:M.183, B:E.184, B:E.184, A:H.7, A:R.45
- Water bridges: B:S.91, B:Y.160
R1X.19: 11 residues within 4Å:- Chain C: V.66, R.88, S.91, Y.160, E.182, M.183, E.184
- Chain E: H.7, R.45
- Ligands: HPA.18, ART.20
9 PLIP interactions:3 interactions with chain E, 6 interactions with chain C- Hydrogen bonds: E:H.7, E:R.45, E:R.45, C:R.88, C:E.182, C:M.183, C:E.184, C:E.184
- Water bridges: C:Y.160
R1X.29: 11 residues within 4Å:- Chain D: V.66, R.88, S.91, Y.160, E.182, M.183, E.184
- Chain F: H.7, R.45
- Ligands: HPA.28, ART.30
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain D- Hydrogen bonds: F:H.7, F:R.45, F:R.45, D:M.183, D:E.184, D:E.184
R1X.39: 11 residues within 4Å:- Chain C: H.7, R.45
- Chain E: V.66, R.88, S.91, Y.160, E.182, M.183, E.184
- Ligands: HPA.38, ART.40
7 PLIP interactions:4 interactions with chain E, 3 interactions with chain C- Hydrogen bonds: E:E.182, E:M.183, E:E.184, E:E.184, C:H.7, C:R.45, C:R.45
R1X.43: 11 residues within 4Å:- Chain D: H.7, R.45
- Chain F: V.66, R.88, S.91, Y.160, E.182, M.183, E.184
- Ligands: HPA.42, ART.44
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain F- Hydrogen bonds: D:H.7, D:R.45, D:R.45, F:M.183, F:E.184, F:E.184
- 6 x ART: ARSENATE(Non-covalent)
ART.3: 10 residues within 4Å:- Chain A: V.22, G.23, R.27, R.88, A.89, G.90, S.91, E.184
- Chain B: R.45
- Ligands: R1X.2
11 PLIP interactions:9 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:G.23, A:D.24, A:R.27, A:R.27, A:R.88, A:R.88, A:S.91, A:S.91, A:S.91, B:R.45, B:R.45
ART.14: 10 residues within 4Å:- Chain A: R.45
- Chain B: V.22, G.23, R.27, R.88, A.89, G.90, S.91, E.184
- Ligands: R1X.13
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:G.23, B:D.24, B:R.27, B:R.27, B:R.88, B:R.88, B:S.91, B:S.91, B:S.91, A:R.45, A:R.45
ART.20: 10 residues within 4Å:- Chain C: V.22, G.23, R.27, R.88, A.89, G.90, S.91, E.184
- Chain E: R.45
- Ligands: R1X.19
10 PLIP interactions:2 interactions with chain E, 8 interactions with chain C- Hydrogen bonds: E:R.45, E:R.45, C:G.23, C:R.27, C:R.27, C:R.88, C:R.88, C:S.91, C:S.91, C:S.91
ART.30: 10 residues within 4Å:- Chain D: V.22, G.23, R.27, R.88, A.89, G.90, S.91, E.184
- Chain F: R.45
- Ligands: R1X.29
10 PLIP interactions:2 interactions with chain F, 8 interactions with chain D- Hydrogen bonds: F:R.45, F:R.45, D:G.23, D:R.27, D:R.27, D:R.88, D:R.88, D:S.91, D:S.91, D:S.91
ART.40: 10 residues within 4Å:- Chain C: R.45
- Chain E: V.22, G.23, R.27, R.88, A.89, G.90, S.91, E.184
- Ligands: R1X.39
11 PLIP interactions:9 interactions with chain E, 2 interactions with chain C- Hydrogen bonds: E:G.23, E:D.24, E:R.27, E:R.27, E:R.88, E:R.88, E:S.91, E:S.91, E:S.91, C:R.45, C:R.45
ART.44: 8 residues within 4Å:- Chain D: R.45
- Chain F: V.22, G.23, R.88, A.89, G.90, S.91
- Ligands: R1X.43
8 PLIP interactions:2 interactions with chain D, 6 interactions with chain F- Hydrogen bonds: D:R.45, D:R.45, F:G.23, F:R.88, F:R.88, F:S.91, F:S.91, F:S.91
- 24 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 5 residues within 4Å:- Chain A: E.76, L.121, L.194, R.195
- Chain B: N.163
Ligand excluded by PLIPFMT.5: 1 residues within 4Å:- Chain A: Y.244
Ligand excluded by PLIPFMT.6: 4 residues within 4Å:- Chain A: R.116
- Chain B: D.115, R.116, H.119
Ligand excluded by PLIPFMT.7: 3 residues within 4Å:- Chain A: S.168, P.209, F.210
Ligand excluded by PLIPFMT.8: 3 residues within 4Å:- Chain A: V.129, G.130, T.193
Ligand excluded by PLIPFMT.9: 3 residues within 4Å:- Chain A: E.77, Q.80, N.81
Ligand excluded by PLIPFMT.10: 4 residues within 4Å:- Chain A: Q.96, S.174, K.175, N.177
Ligand excluded by PLIPFMT.15: 5 residues within 4Å:- Chain A: N.163
- Chain B: E.76, L.121, L.194, R.195
Ligand excluded by PLIPFMT.16: 2 residues within 4Å:- Chain B: Q.80, N.81
Ligand excluded by PLIPFMT.21: 5 residues within 4Å:- Chain C: E.76, L.121, L.194, R.195
- Chain E: N.163
Ligand excluded by PLIPFMT.22: 5 residues within 4Å:- Chain C: P.25, G.26, D.29, Y.43, K.48
Ligand excluded by PLIPFMT.23: 3 residues within 4Å:- Chain C: S.168, P.209, F.210
Ligand excluded by PLIPFMT.24: 3 residues within 4Å:- Chain C: E.77, Q.80, N.81
Ligand excluded by PLIPFMT.25: 4 residues within 4Å:- Chain A: N.109
- Chain C: V.129, G.130, T.193
Ligand excluded by PLIPFMT.26: 3 residues within 4Å:- Chain C: R.116, H.119
- Chain E: R.116
Ligand excluded by PLIPFMT.31: 4 residues within 4Å:- Chain B: I.153
- Chain D: G.130, T.193
- Ligands: NA.17
Ligand excluded by PLIPFMT.32: 3 residues within 4Å:- Chain D: Y.43
- Chain F: G.26
- Ligands: NA.37
Ligand excluded by PLIPFMT.33: 5 residues within 4Å:- Chain D: E.76, L.121, L.194, R.195
- Chain F: N.163
Ligand excluded by PLIPFMT.34: 3 residues within 4Å:- Chain D: H.119, G.124
- Ligands: FMT.35
Ligand excluded by PLIPFMT.35: 4 residues within 4Å:- Chain D: R.116, H.119
- Chain F: R.116
- Ligands: FMT.34
Ligand excluded by PLIPFMT.41: 6 residues within 4Å:- Chain C: N.163
- Chain E: E.76, L.121, I.191, L.194, R.195
Ligand excluded by PLIPFMT.45: 2 residues within 4Å:- Chain F: H.119, G.124
Ligand excluded by PLIPFMT.46: 5 residues within 4Å:- Chain D: N.163
- Chain F: E.76, L.121, L.194, R.195
Ligand excluded by PLIPFMT.47: 2 residues within 4Å:- Chain F: E.77, N.81
Ligand excluded by PLIP- 5 x NA: SODIUM ION(Non-functional Binders)
NA.11: 4 residues within 4Å:- Chain A: E.46, V.66
- Chain B: E.46, V.66
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.46, A:V.66, A:V.66, B:E.46, B:V.66
- Water bridges: A:G.70
NA.17: 4 residues within 4Å:- Chain B: N.109
- Chain D: G.130, D.131
- Ligands: FMT.31
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:F.132, B:N.109, B:N.109
NA.27: 4 residues within 4Å:- Chain C: E.46, V.66
- Chain E: E.46, V.66
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain E- Hydrogen bonds: C:V.66, E:E.46
- Water bridges: C:G.70
NA.36: 4 residues within 4Å:- Chain D: E.46, V.66
- Chain F: E.46, V.66
5 PLIP interactions:2 interactions with chain F, 3 interactions with chain D- Hydrogen bonds: F:E.46, F:V.66, D:E.46, D:E.46
- Water bridges: D:G.70
NA.37: 5 residues within 4Å:- Chain D: Y.43, R.45
- Chain F: P.25, Y.43
- Ligands: FMT.32
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:R.45
- Water bridges: F:G.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaikuad, A. et al., Conservation of structure and activity in Plasmodium purine nucleoside phosphorylases. Bmc Struct.Biol. (2009)
- Release Date
- 2009-08-04
- Peptides
- Purine nucleoside phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x HPA: HYPOXANTHINE(Non-covalent)
- 6 x R1X: 1,4-anhydro-D-ribitol(Non-covalent)
- 6 x ART: ARSENATE(Non-covalent)
- 24 x FMT: FORMIC ACID(Non-functional Binders)
- 5 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaikuad, A. et al., Conservation of structure and activity in Plasmodium purine nucleoside phosphorylases. Bmc Struct.Biol. (2009)
- Release Date
- 2009-08-04
- Peptides
- Purine nucleoside phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F