SMTL ID : 3eok.1

Crystal structure determination of duck (Anas platyrhynchos) hemoglobin at 2.1 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 16 residues within 4Å: Chain A: Y.42, F.43, H.45, H.58, K.61, V.62, L.66, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:Y.42, A:Y.42, A:F.43, A:F.43, A:K.61, A:V.62, A:L.66, A:L.91, A:V.93, A:F.98, A:F.98, A:V.132, A:L.136 Salt bridges: A:H.45, A:K.61 pi-Stacking: A:H.58 Metal complexes: A:H.87, H2O.1 HEM.2: 17 residues within 4Å: Chain B: T.38, F.41, F.42, H.63, K.66, V.67, S.70, F.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 17 PLIP interactions: 16 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:T.38, B:F.41, B:F.41, B:F.42, B:F.42, B:V.67, B:F.71, B:L.88, B:L.96, B:V.98, B:N.102, B:F.103, B:L.141 Hydrogen bonds: B:H.63 pi-Stacking: B:H.63 Metal complexes: B:H.92, H2O.2 HEM.3: 16 residues within 4Å: Chain C: Y.42, F.43, H.45, H.58, K.61, V.62, L.66, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 18 PLIP interactions: 17 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: C:Y.42, C:Y.42, C:F.43, C:F.43, C:K.61, C:V.62, C:L.66, C:L.91, C:V.93, C:F.98, C:F.98, C:V.132, C:L.136 Salt bridges: C:H.45, C:K.61 pi-Stacking: C:H.58 Metal complexes: C:H.87, H2O.3 HEM.4: 17 residues within 4Å: Chain D: T.38, F.41, F.42, H.63, K.66, V.67, S.70, F.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 17 PLIP interactions: 16 interactions with chain D, 1 Ligand-Water interactions, Hydrophobic interactions: D:T.38, D:F.41, D:F.41, D:F.42, D:F.42, D:V.67, D:F.71, D:L.88, D:L.96, D:V.98, D:N.102, D:F.103, D:L.141 Hydrogen bonds: D:H.63 pi-Stacking: D:H.63 Metal complexes: D:H.92, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sathya Moorthy, Pon. et al., Structure determination of haemoglobin from Turkey(meleagris gallopavo) at 2.8 Angstrom resolution. To be Published

Release Date

2009-10-06

Peptides

Hemoglobin subunit alpha-A: AC
Hemoglobin subunit beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Hemoglobin subunit alpha-A

Hemoglobin subunit beta