- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.2: 3 residues within 4Å:- Chain A: S.16, Q.37
- Ligands: PPV.6
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:S.16
MG.3: 3 residues within 4Å:- Chain A: K.282, K.286
- Chain B: C.26
No protein-ligand interaction detected (PLIP)MG.4: 1 residues within 4Å:- Chain A: Q.17
No protein-ligand interaction detected (PLIP)MG.5: 1 residues within 4Å:- Chain A: W.67
No protein-ligand interaction detected (PLIP)MG.7: 1 residues within 4Å:- Chain B: G.11
No protein-ligand interaction detected (PLIP)MG.8: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.10: 2 residues within 4Å:- Chain C: S.16
- Ligands: PPV.13
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:S.16, H2O.202, H2O.225
MG.11: 1 residues within 4Å:- Chain C: Q.17
No protein-ligand interaction detected (PLIP)MG.12: 1 residues within 4Å:- Chain C: D.66
No protein-ligand interaction detected (PLIP)MG.14: 1 residues within 4Å:- Chain D: G.51
No protein-ligand interaction detected (PLIP)- 2 x PPV: PYROPHOSPHATE(Non-covalent)
PPV.6: 10 residues within 4Å:- Chain A: T.11, G.12, V.13, G.14, K.15, S.16, Q.37, N.47, R.208
- Ligands: MG.2
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:G.12, A:V.13, A:G.14, A:K.15, A:S.16, A:Q.37, A:N.47, A:R.208
- Water bridges: A:K.15, A:K.15, A:K.15, A:Q.17, A:Q.17, A:G.99
- Salt bridges: A:K.15, A:K.15, A:R.208
PPV.13: 11 residues within 4Å:- Chain C: T.10, T.11, G.12, V.13, G.14, K.15, S.16, Q.37, N.47, R.208
- Ligands: MG.10
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:G.12, C:V.13, C:G.14, C:K.15, C:S.16, C:Q.37, C:N.47
- Water bridges: C:K.15, C:K.15, C:K.15, C:S.16
- Salt bridges: C:K.15, C:K.15, C:R.208
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Zhou, C. et al., Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism. Proc.Natl.Acad.Sci.Usa (2008)
- Release Date
- 2008-11-04
- Peptides
- tRNA isopentenyltransferase: AC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 2 x PPV: PYROPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Zhou, C. et al., Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: insight into tRNA recognition and reaction mechanism. Proc.Natl.Acad.Sci.Usa (2008)
- Release Date
- 2008-11-04
- Peptides
- tRNA isopentenyltransferase: AC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
B