SMTL ID : 3epo.1

Crystal structure of Caulobacter crescentus ThiC complexed with HMP-P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x MP5: (4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE(Non-covalent)

MP5.1: 12 residues within 4Å: Chain A: N.219, L.250, Y.277, H.313, S.333, R.334, G.335, R.377, E.413, Y.440, L.442, C.474 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.440 Hydrogen bonds: A:N.219, A:R.334, A:G.335, A:D.374 Water bridges: A:Y.277 Salt bridges: A:H.313, A:R.377 pi-Cation interactions: A:R.377 MP5.2: 9 residues within 4Å: Chain B: Y.277, H.313, S.333, R.334, G.335, D.374, R.377, E.413, L.442 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.219, B:R.334, B:G.335 Salt bridges: B:H.313, B:R.377 pi-Cation interactions: B:R.377

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chatterjee, A. et al., Reconstitution of ThiC in thiamine pyrimidine biosynthesis expands the radical SAM superfamily. Nat.Chem.Biol. (2008)

Release Date

2008-10-28

Peptides

Thiamine biosynthesis protein thiC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thiamine biosynthesis protein thiC

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