SMTL ID : 3epr.1 (1 other biounit)

Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.149, L.150, N.151, P.153, N.208, T.211, F.230 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.149, A:D.149, A:L.150, A:N.151, A:N.208 Water bridges: A:N.151 GOL.3: 7 residues within 4Å: Chain B: D.149, L.150, N.151, P.153, N.208, T.211, F.230 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.149, B:D.149, B:L.150, B:N.151, B:N.208 Water bridges: B:N.151 GOL.5: 7 residues within 4Å: Chain C: D.149, L.150, N.151, P.153, N.208, T.211, F.230 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.149, C:L.150, C:N.151, C:N.208 Water bridges: C:N.151 GOL.7: 7 residues within 4Å: Chain D: D.149, L.150, N.151, P.153, N.208, T.211, F.230 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:D.149, D:L.150, D:N.151, D:N.208 Water bridges: D:N.151

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: D.11, D.13, D.207, D.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.212 Water bridges: A:N.208 NA.4: 4 residues within 4Å: Chain B: D.11, D.13, D.207, D.212 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.207 Water bridges: B:N.208 NA.6: 4 residues within 4Å: Chain C: D.11, D.13, D.207, D.212 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.11 Water bridges: C:N.208 NA.8: 4 residues within 4Å: Chain D: D.11, D.13, D.207, D.212 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.212 Water bridges: D:N.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Crystal structure of putative HAD superfamily hydrolase from Streptococcus agalactiae. To be Published

Release Date

2008-11-04

Peptides

Hydrolase, haloacid dehalogenase-like family: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Hydrolase, haloacid dehalogenase-like family

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