SMTL ID : 3epz.1 (1 other biounit)

Structure of the replication foci-targeting sequence of human DNA cytosine methyltransferase DNMT1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.21, C.24, C.82, H.86 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:C.82, A:H.86

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.2: 8 residues within 4Å: Chain A: Q.72, W.133, I.134, T.135, S.148, E.153, E.182, Q.185 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.72, A:I.134, A:S.148, A:E.153, A:Q.185

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.244, L.245, T.246, R.250, I.253 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.246

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: G.168, L.169, M.170, L.208, N.209, L.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Syeda, F. et al., The replication focus targeting sequence (RFTS) domain is a DNA-competitive inhibitor of Dnmt1. J.Biol.Chem. (2011)

Release Date

2008-11-25

Peptides

DNA (cytosine-5)-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase 1

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