SMTL ID : 3eqt.1

Crystal structure of human LGP2 C-terminal domain in complex with dsRNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x G- C- G- C- G- C- G- C: 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3'(Non-covalent)

G-C-G-C-G-C-G-C.1: 29 residues within 4Å: Chain A: T.35, H.36, V.55, I.57, W.64, G.80, L.81, V.92, L.93, K.94, V.95, K.111, W.112, S.113, R.114 Chain B: E.33, H.36, K.59, F.61, W.64, R.96 Ligands: G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2, G-C-G-C-G-C-G-C.2 Protein-ligand interaction information (PLIP) not available G-C-G-C-G-C-G-C.2: 30 residues within 4Å: Chain A: E.33, H.36, K.59, F.61, W.64, R.96 Chain B: T.35, H.36, V.55, I.57, W.64, V.69, W.79, G.80, L.81, V.92, L.93, K.94, V.95, K.111, W.112, S.113 Ligands: G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1, G-C-G-C-G-C-G-C.1 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.16, C.19, C.72, C.75 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.16, A:C.19, A:C.72, A:C.75 ZN.4: 4 residues within 4Å: Chain B: C.16, C.19, C.72, C.75 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.16, B:C.19, B:C.72, B:C.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA. J.Biol.Chem. (2009)

Release Date

2009-03-10

Peptides

ATP-dependent RNA helicase DHX58: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-dependent RNA helicase DHX58