SMTL ID : 3err.1

Microtubule binding domain from mouse cytoplasmic dynein as a fusion with seryl-tRNA synthetase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: R.365, E.367, M.379, R.380, V.381, F.384, K.386, E.454, T.455, H.456, S.457, T.489, A.492, R.495 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.365, A:E.367, A:E.367, A:V.381, A:E.454, A:E.454, A:T.455, A:S.457 Water bridges: A:R.365, A:S.457, A:A.492, A:A.492, A:R.495 Salt bridges: A:R.365, A:K.386 pi-Stacking: A:F.384, A:F.384 pi-Cation interactions: A:R.495 AMP.2: 14 residues within 4Å: Chain B: R.365, E.367, M.379, R.380, V.381, F.384, K.386, E.454, T.455, H.456, S.457, T.489, A.492, R.495 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:E.367, B:E.367, B:V.381, B:E.454, B:E.454 Water bridges: B:R.365, B:R.365, B:R.365, B:R.365, B:S.457, B:S.457, B:T.489, B:T.489, B:A.492, B:R.495 Salt bridges: B:R.365, B:K.386 pi-Stacking: B:F.384, B:F.384 pi-Cation interactions: B:R.495, B:R.495

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carter, A.P. et al., Structure and functional role of dynein's microtubule-binding domain. Science (2008)

Release Date

2008-11-25

Peptides

fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus