SMTL ID : 3ery.2 (1 other biounit)

Different thermodynamic binding mechanisms and peptide fine specificities associated with a panel of structurally similar high-affinity T cell receptors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GLN- LEU- SER- PRO- PHE- PRO- PHE- ASP- LEU: 2-oxoglutarate dehydrogenase E1 peptide(Non-covalent)

GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.1: 23 residues within 4Å: Chain A: Y.7, V.66, Q.70, W.73, N.77, T.80, L.81, Y.84, R.97, Y.99, E.114, F.116, Y.123, W.133, T.143, K.146, W.147, A.150, A.152, Y.155, L.160, E.163, W.167 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:V.66, A:W.73, A:L.81, A:E.114, A:F.116, A:Y.123, A:W.133, A:W.147, A:A.150, A:A.152, A:Y.155, A:L.160 Hydrogen bonds: A:N.77, A:N.77, A:R.97, A:R.97, A:Y.99, A:Y.99, A:Y.99, A:K.146, A:E.163, A:E.163, A:W.167 Water bridges: A:T.80 Salt bridges: A:K.146, A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, L.L. et al., Different thermodynamic binding mechanisms and peptide fine specificities associated with a panel of structurally similar high-affinity T cell receptors. Biochemistry (2008)

Release Date

2008-11-25

Peptides

H-2 class I histocompatibility antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

H-2 class I histocompatibility antigen

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