SMTL ID : 3es4.1

Crystal structure of Protein of unknown function (DUF861) with a RmlC-like cupin fold (17741406) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.64 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: G.1, M.2, T.3, M.4 Ligand excluded by PLIP

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: M.48, A.49, E.50, S.105, F.106, R.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.107 EDO.3: 4 residues within 4Å: Chain A: F.7, D.14, Q.32, I.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.14, A:D.14, A:I.33 EDO.4: 3 residues within 4Å: Chain A: N.55, Y.56, A.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.57 Water bridges: A:Y.56, A:Y.56 EDO.5: 3 residues within 4Å: Chain A: S.10, D.11, D.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.11, A:D.11, A:D.12 EDO.6: 1 residues within 4Å: Chain A: E.39 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.39 EDO.7: 6 residues within 4Å: Chain A: S.75, Q.76, A.77, P.97, S.98, R.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.75 Water bridges: A:S.98 EDO.8: 2 residues within 4Å: Chain B: F.7, R.31 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.31 EDO.9: 4 residues within 4Å: Chain B: Q.32, I.33, W.34, Q.35 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.32, B:Q.35, B:Q.35 EDO.10: 2 residues within 4Å: Chain B: R.30, I.43 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.30, B:R.30 EDO.11: 3 residues within 4Å: Chain A: P.5 Chain B: S.91, A.93 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.93 Water bridges: B:Q.76, B:Q.76, A:W.34 EDO.12: 5 residues within 4Å: Chain B: Y.56, R.59, E.63, F.65, K.108 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.59, B:R.59, B:K.108 Water bridges: B:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Protein of unknown function (DUF861) with a RmlC-like cupin fold (17741406) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.64 A resolution. To be published

Release Date

2008-10-14

Peptides

uncharacterized protein DUF861 with a RmlC-like cupin fold: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

uncharacterized protein DUF861 with a RmlC-like cupin fold