- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMK: CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2-ULO-PYRANOSONIC ACID(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: R.120
- Chain B: H.206
- Chain C: Q.97
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain A- Water bridges: C:H.98, A:R.120, A:E.121, A:E.121
EDO.3: 3 residues within 4Å:- Chain A: Q.97
- Chain C: R.120
- Chain D: H.206
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.121
- Water bridges: C:R.120
EDO.4: 4 residues within 4Å:- Chain A: Q.25, L.28, Q.29
- Chain B: L.36
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:Q.25
- Hydrogen bonds: B:L.36
EDO.6: 4 residues within 4Å:- Chain B: A.150, S.151, S.153, C.156
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.153
EDO.7: 3 residues within 4Å:- Chain B: H.130, N.131, P.134
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.127, B:H.130, B:N.131
EDO.8: 7 residues within 4Å:- Chain B: P.39, V.40, T.41, Y.44, C.156, L.157, S.158
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.41, B:S.158
- Water bridges: B:T.41
EDO.10: 4 residues within 4Å:- Chain C: A.150, S.151, S.153, D.154
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.151
- Water bridges: C:C.156
EDO.12: 8 residues within 4Å:- Chain D: P.39, V.40, T.41, A.43, Y.44, C.156, L.157, S.158
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.41, D:T.41, D:S.158
EDO.13: 4 residues within 4Å:- Chain D: E.49, E.53, R.57, R.193
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.53, D:R.57, D:R.193
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chiu, H.J. et al., Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2008-10-21
- Peptides
- putative phosphosugar isomerase involved in capsule formation: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMK: CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2-ULO-PYRANOSONIC ACID(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chiu, H.J. et al., Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2008-10-21
- Peptides
- putative phosphosugar isomerase involved in capsule formation: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D