SMTL ID : 3eto.1 (1 other biounit)

2 Angstrom Xray structure of the NOTCH1 Negative Regulatory Region (NRR)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.13, N.16, V.18, D.31, D.34 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.13, A:D.13, A:V.18, A:D.31, A:D.34 CA.2: 6 residues within 4Å: Chain A: Y.55, D.58, H.60, D.62, D.73, D.76 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Y.55, A:D.62, A:D.73, A:D.73, A:D.76 CA.3: 6 residues within 4Å: Chain A: H.95, D.98, H.100, D.102, D.113, D.116 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.95, A:H.100, A:D.102, A:D.113, A:D.116

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: H.26, W.30, D.41, P.42, W.43 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: S.97, G.114, L.115, D.116 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.97, A:S.97, A:D.116 Water bridges: A:R.192, A:R.192 GOL.6: 3 residues within 4Å: Chain A: R.164, M.171 Ligands: GOL.8 No protein-ligand interaction detected (PLIP) GOL.7: 4 residues within 4Å: Chain A: I.223, P.224, Y.225, K.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.223 Water bridges: A:K.226 GOL.8: 2 residues within 4Å: Chain A: V.235 Ligands: GOL.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gordon, W.R. et al., Structure of the Notch1-negative regulatory region: implications for normal activation and pathogenic signaling in T-ALL. Blood (2009)

Release Date

2008-12-23

Peptides

Neurogenic locus notch homolog protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neurogenic locus notch homolog protein 1

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