SMTL ID : 3eu8.2 (3 other biounits)

Crystal structure of putative glucoamylase (YP_210071.1) from Bacteroides fragilis NCTC 9343 at 2.12 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: S.11, T.14, S.15 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.11, A:T.14

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: S.15, L.16, H.357, Y.360, E.361 Ligand excluded by PLIP

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: S.11, S.12, T.14, L.16 Ligands: K.1, EDO.16 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: T.24, R.28, Y.360 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: Q.418, L.421, K.422, F.426, V.428 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: R.27, F.30, N.31, Y.82 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: G.305, G.307, P.308, D.309, C.310, H.358 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: Y.48, H.49, M.50, G.52, Y.54 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: R.298, N.299, P.300, H.302 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: R.176, N.181, P.221, A.223 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: R.85, E.86, L.89, S.153, E.155, E.156 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: E.242, R.298 Ligand excluded by PLIP EDO.13: 1 residues within 4Å: Chain A: E.245 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: R.286, L.290, R.293, Q.351 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: R.286, T.348, P.349, D.350, Q.351 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: S.12, A.13, T.14 Ligands: EDO.3 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: V.271, V.346, Y.402, W.408 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain A: E.254, A.255, G.256, G.326, P.327, L.328, D.331 Ligand excluded by PLIP EDO.19: 11 residues within 4Å: Chain A: F.33, A.37, G.42, L.43, A.44, S.67, G.70, I.71, I.74, R.91, I.95 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain A: E.46, H.111, W.112, Y.322, I.390 Ligands: EDO.21 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain A: E.46, R.47, Y.317, L.388 Ligands: EDO.20 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain A: H.146, Q.147, A.150, P.415 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain A: W.185, N.203, E.204, W.260 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative glucoamylase (YP_210071.1) from Bacteroides fragilis NCTC 9343 at 2.12 A resolution. To be published

Release Date

2008-10-21

Peptides

putative glucoamylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

putative glucoamylase

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