SMTL ID : 3exl.1

Crystal Structure of a p53 Core Tetramer Bound to DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 7 residues within 4Å: Chain A: L.16, T.20, K.22, P.44, H.135 Chain D: K.67, S.68 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain D Hydrophobic interactions: A:T.20, A:K.22 Hydrogen bonds: A:T.20, A:T.20, D:S.68, D:S.68 Water bridges: A:K.22, D:K.67, D:K.67 Salt bridges: A:K.22, A:K.22, A:H.135, D:K.67 FLC.3: 5 residues within 4Å: Chain D: L.16, T.20, K.22, P.44, H.135 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:T.20, D:K.22 Hydrogen bonds: D:T.20, D:T.20 Water bridges: D:K.22 Salt bridges: D:K.22, D:K.22, D:H.135 FLC.5: 5 residues within 4Å: Chain G: L.16, T.20, K.22, P.44, H.135 7 PLIP interactions: 7 interactions with chain G Hydrophobic interactions: G:T.20, G:K.22 Hydrogen bonds: G:T.20 Water bridges: G:K.22 Salt bridges: G:K.22, G:K.22, G:H.135 FLC.7: 7 residues within 4Å: Chain G: K.67, S.68 Chain J: L.16, T.20, K.22, P.44, H.135 12 PLIP interactions: 7 interactions with chain J, 5 interactions with chain G Hydrophobic interactions: J:T.20, J:K.22 Hydrogen bonds: J:T.20, G:S.68, G:S.68 Water bridges: J:K.22, G:K.67, G:K.67 Salt bridges: J:K.22, J:K.22, J:H.135, G:K.67

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.78, A:H.81, A:C.140, A:C.144 ZN.4: 4 residues within 4Å: Chain D: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.78, D:H.81, D:C.140, D:C.144 ZN.6: 4 residues within 4Å: Chain G: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.78, G:H.81, G:C.140, G:C.144 ZN.8: 4 residues within 4Å: Chain J: C.78, H.81, C.140, C.144 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.78, J:H.81, J:C.140, J:C.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malecka, K.A. et al., Crystal structure of a p53 core tetramer bound to DNA. Oncogene (2009)

Release Date

2008-12-16

Peptides

mouse p53 core domain: ADGJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

mouse p53 core domain

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