SMTL ID : 3ey1.1

A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain B: C.1, G.2 Chain C: G.18, N.19, P.20 Chain D: G.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.19 GOL.2: 3 residues within 4Å: Chain B: U.7, U.8 Chain D: U.8 No protein-ligand interaction detected (PLIP) GOL.3: 3 residues within 4Å: Chain B: A.5, A.6 Chain C: K.80 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.80, C:K.80 GOL.4: 6 residues within 4Å: Chain A: G.18, N.19, P.20 Chain B: G.12 Chain D: C.1, G.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19 GOL.5: 3 residues within 4Å: Chain B: U.8 Chain D: U.7, U.8 No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain A: K.80 Chain D: A.5, A.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.80, A:K.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pallan, P.S. et al., A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution. Chem.Commun.(Camb.) (2009)

Release Date

2009-04-28

Peptides

Ribonuclease H: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Ribonuclease H

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