SMTL ID : 3eyi.1

The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x DC- DG- DC- DG- DC- DG: 5'-TCGCGCG-3'(Non-covalent)

DC-DG-DC-DG-DC-DG.1: 13 residues within 4Å: Chain A: R.26, K.40, N.43, R.44, Y.47, K.62 Chain B: K.40 Ligands: DT-DC-DG-DC-DG-DC-DG.2, DT-DC-DG-DC-DG-DC-DG.2, DT-DC-DG-DC-DG-DC-DG.2, DT-DC-DG-DC-DG-DC-DG.2, DT-DC-DG-DC-DG-DC-DG.2, DT-DC-DG-DC-DG-DC-DG.2 Protein-ligand interaction information (PLIP) not available DC-DG-DC-DG-DC-DG.2: 12 residues within 4Å: Chain A: K.40 Chain B: K.40, N.43, R.44, Y.47, K.62 Ligands: DC-DG-DC-DG-DC-DG.1, DC-DG-DC-DG-DC-DG.1, DC-DG-DC-DG-DC-DG.1, DC-DG-DC-DG-DC-DG.1, DC-DG-DC-DG-DC-DG.1, DC-DG-DC-DG-DC-DG.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, S.C. et al., The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2009-01-13

Peptides

Z-DNA-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Z-DNA-binding protein 1