- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 5 residues within 4Å:- Chain A: H.33, H.86, H.88, H.90, E.101
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.33, A:H.86, A:H.88, A:H.90
ZN.11: 5 residues within 4Å:- Chain B: H.33, H.86, H.88, H.90, E.101
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.33, B:H.86, B:H.88, B:H.90
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.4: 3 residues within 4Å:- Chain A: D.5, K.7, S.8
Ligand excluded by PLIPCL.5: 2 residues within 4Å:- Chain A: D.29, E.32
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain B: T.4, D.5, K.7, S.8
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain B: V.28, D.29, E.32
Ligand excluded by PLIP- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 6 residues within 4Å:- Chain A: H.70, H.72, Y.80
- Chain B: H.75
- Ligands: NI.1, MLI.8
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.80, A:Y.80, B:H.75
EDO.7: 2 residues within 4Å:- Chain A: R.13, Y.15
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.13
- Water bridges: A:Y.15, A:Y.15
EDO.14: 6 residues within 4Å:- Chain A: H.75
- Chain B: H.70, H.72, Y.80
- Ligands: NI.10, MLI.16
No protein-ligand interaction detected (PLIP)EDO.15: 1 residues within 4Å:- Chain B: R.13
No protein-ligand interaction detected (PLIP)- 3 x MLI: MALONATE ION(Non-functional Binders)
MLI.8: 9 residues within 4Å:- Chain A: H.70, H.72, H.126, F.127
- Chain B: G.74, H.75, F.130
- Ligands: NI.1, EDO.6
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.130
- Hydrogen bonds: B:H.75
- Water bridges: B:H.75
- Salt bridges: B:H.75, B:H.75, A:H.70, A:H.72, A:H.126, A:H.126
MLI.9: 3 residues within 4Å:- Chain A: E.63, E.64, G.66
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.63
MLI.16: 9 residues within 4Å:- Chain A: G.74, H.75, F.130
- Chain B: H.70, H.72, H.126, F.127
- Ligands: NI.10, EDO.14
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:F.130
- Hydrogen bonds: A:H.75
- Water bridges: A:H.75
- Salt bridges: A:H.75, A:H.75, B:H.70, B:H.72, B:H.126, B:H.126
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- An, Y.J. et al., Structural basis for the specialization of Nur, a nickel-specific Fur homolog, in metal sensing and DNA recognition. Nucleic Acids Res. (2009)
- Release Date
- 2009-06-09
- Peptides
- Putative iron uptake regulatory protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- An, Y.J. et al., Structural basis for the specialization of Nur, a nickel-specific Fur homolog, in metal sensing and DNA recognition. Nucleic Acids Res. (2009)
- Release Date
- 2009-06-09
- Peptides
- Putative iron uptake regulatory protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B