SMTL ID : 3ez2.1

Partition protein-ADP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: G.118, G.119, V.120, S.121, K.122, T.123, V.124, K.316, P.344, R.345, L.346, F.349, E.350, G.353 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.119, A:V.120, A:S.121, A:K.122, A:T.123, A:V.124, A:P.344, A:L.346 Water bridges: A:S.121, A:K.122, A:K.122, A:T.123, A:T.123, A:T.123, A:D.251, A:K.316 Salt bridges: A:K.122 pi-Cation interactions: A:K.316 ADP.3: 10 residues within 4Å: Chain A: M.159, S.162, H.163, K.164, I.167, F.356 Chain B: A.277, V.279, D.280, K.320 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.322, B:D.322, A:S.162 Water bridges: B:T.278 Salt bridges: B:K.320, B:K.320, A:K.164, A:K.164 ADP.4: 15 residues within 4Å: Chain B: G.118, G.119, V.120, S.121, K.122, T.123, V.124, K.316, P.344, R.345, L.346, F.349, E.350, G.353 Ligands: MG.5 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:G.119, B:V.120, B:S.121, B:K.122, B:T.123, B:V.124, B:P.344, B:L.346 Water bridges: B:S.121, B:K.122, B:K.122, B:T.123, B:T.123, B:D.251, B:K.316, B:R.345 Salt bridges: B:K.122 pi-Cation interactions: B:K.316 ADP.7: 9 residues within 4Å: Chain A: A.277, V.279, D.280 Chain B: M.159, S.162, H.163, K.164, I.167, F.356 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.162 Salt bridges: B:K.164, B:K.164, A:K.320 Water bridges: A:K.320, A:K.320

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.123 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.123, H2O.7, H2O.10, H2O.10, H2O.10 MG.5: 2 residues within 4Å: Chain B: T.123 Ligands: ADP.4 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.123, H2O.19, H2O.19, H2O.20, H2O.21

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.6: 6 residues within 4Å: Chain B: K.43, K.73, S.79, M.80, K.81, Y.82 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.73, B:Y.82 Water bridges: B:K.43, B:K.43, B:Y.82

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain B: Q.176, Q.180, H.223 No protein-ligand interaction detected (PLIP) GOL.9: 5 residues within 4Å: Chain B: Y.41, A.42, R.74, Y.82, A.83 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunham, T.D. et al., Structural basis for ADP-mediated transcriptional regulation by P1 and P7 ParA. Embo J. (2009)

Release Date

2009-06-02

Peptides

Plasmid partition protein A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Plasmid partition protein A

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