SMTL ID : 3ezs.1

Crystal structure of aminotransferase AspB (NP_207418.1) from HELICOBACTER PYLORI 26695 at 2.19 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: G.90, S.91, R.92, S.228, S.230, R.239 Chain B: Y.55 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.91, A:S.91, A:R.92, A:S.228, A:S.230 Water bridges: A:S.91, A:Y.118, A:R.239 Salt bridges: A:R.239 PO4.5: 7 residues within 4Å: Chain A: Y.55 Chain B: G.90, S.91, R.92, S.228, S.230, R.239 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.91, B:S.91, B:R.92, B:S.228, B:S.230, A:Y.55, A:Y.55 Salt bridges: B:R.239

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: P.114, P.145, N.161, S.162, R.169, L.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.161, A:N.164, A:R.169, A:L.171 EDO.3: 5 residues within 4Å: Chain A: L.134, S.146, L.147, N.148, E.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.134, A:N.148 EDO.4: 6 residues within 4Å: Chain A: Y.118, Y.121, N.161, N.165, D.193, Y.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.121, A:N.161, A:Y.196 EDO.6: 1 residues within 4Å: Chain B: K.181 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.181 EDO.7: 5 residues within 4Å: Chain A: F.104 Chain B: M.2, T.3, K.126, F.127 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.3, B:T.3 EDO.8: 6 residues within 4Å: Chain B: E.122, A.125, K.126, A.130, K.131, S.132 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.130 Water bridges: B:S.132 EDO.9: 7 residues within 4Å: Chain B: P.114, P.145, N.161, S.162, N.164, R.169, L.171 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.161, B:N.164, B:R.169, B:L.171 EDO.10: 5 residues within 4Å: Chain B: T.170, L.171, S.172, P.206, Y.308 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of aminotransferase AspB (NP_207418.1) from HELICOBACTER PYLORI 26695 at 2.19 A resolution. To be published

Release Date

2008-11-18

Peptides

aminotransferase AspB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

aminotransferase AspB