SMTL ID : 3ezu.1

Crystal structure of multidomain protein of unknown function with GGDEF-domain (NP_951600.1) from GEOBACTER SULFURREDUCENS at 1.95 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x UNL: UNKNOWN LIGAND

UNL.1: 7 residues within 4Å: Chain A: F.25, V.44, Q.112, L.168, F.169, W.172 Chain B: F.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.112, A:L.168 UNL.5: 7 residues within 4Å: Chain A: F.109 Chain B: F.25, V.44, Q.112, L.168, F.169, W.172 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.112, B:L.168

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: A.12, L.15, E.16, R.19, Q.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.19, A:Q.59 Water bridges: A:R.19 EDO.3: 4 residues within 4Å: Chain A: D.137 Chain B: H.183, K.198, T.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.137 Water bridges: A:I.138, A:G.139, A:G.139 EDO.4: 3 residues within 4Å: Chain A: R.49, A.53, E.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.56 Water bridges: A:R.19 EDO.6: 5 residues within 4Å: Chain B: A.12, L.15, E.16, R.19, Q.59 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.19, B:Q.59 Water bridges: B:R.19 EDO.7: 4 residues within 4Å: Chain A: H.183, K.198, T.199 Chain B: D.137 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.137 Water bridges: B:I.138, B:G.139, B:G.139 EDO.8: 3 residues within 4Å: Chain B: R.49, A.53, E.56 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.56 Water bridges: B:R.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of multidomain protein of unknown function with GGDEF-domain (NP_951600.1) from GEOBACTER SULFURREDUCENS at 1.95 A resolution. To be published

Release Date

2008-11-18

Peptides

GGDEF domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GGDEF domain protein