SMTL ID : 3ezw.2 (1 other biounit)

Crystal Structure of a Hyperactive Escherichia coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: T.13, Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.83, A:R.83, A:R.83, A:E.84, A:Y.135, A:Q.246 Water bridges: A:T.13, A:T.13 GOL.7: 8 residues within 4Å: Chain B: Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.83, B:R.83, B:R.83, B:E.84, B:Q.246 Water bridges: B:T.13 GOL.11: 8 residues within 4Å: Chain C: Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.83, C:R.83, C:R.83, C:E.84, C:Y.135, C:Q.246 Water bridges: C:T.13, C:T.13 GOL.15: 9 residues within 4Å: Chain D: T.13, Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.83, D:R.83, D:E.84, D:D.245, D:Q.246 Water bridges: D:T.13, D:T.13

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.177, V.178, G.225, Q.226 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: R.177, V.178, G.225, Q.226 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: R.177, V.178, G.225, Q.226 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain D: R.177, V.178, G.225, Q.226 Ligand excluded by PLIP

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: K.116, E.121, R.125, V.131, W.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.116, A:K.116, A:R.125 EDO.4: 7 residues within 4Å: Chain A: W.103, Q.104, C.105, R.106, Y.135, F.307, T.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.103, A:R.106, A:T.349, A:T.349 EDO.5: 5 residues within 4Å: Chain A: H.195, E.277, K.278, A.279, Y.300 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.195, A:A.279, A:A.279, A:Y.300 EDO.6: 11 residues within 4Å: Chain A: D.182, Y.183, T.184, R.219, S.220, I.290, A.291, C.292, G.296, E.297, V.298 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.182, A:Y.183, A:T.184, A:S.220, A:G.296 EDO.9: 7 residues within 4Å: Chain B: W.103, Q.104, C.105, R.106, Y.135, F.307, T.349 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.105, B:R.106, B:T.349 EDO.10: 4 residues within 4Å: Chain B: E.121, R.125, V.131, W.356 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.125 Water bridges: B:K.116, B:K.116, B:R.125 EDO.13: 5 residues within 4Å: Chain C: H.195, E.277, K.278, A.279, Y.300 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.195, C:A.279 EDO.14: 5 residues within 4Å: Chain C: G.259, M.260, A.261, A.405, R.407 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.261, C:A.261 EDO.17: 5 residues within 4Å: Chain D: H.195, E.277, K.278, A.279, Y.300 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.195, D:E.277, D:A.279 EDO.18: 11 residues within 4Å: Chain D: D.182, Y.183, T.184, R.219, S.220, I.290, A.291, C.292, G.296, E.297, V.298 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:D.182, D:Y.183, D:T.184, D:S.220, D:G.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, M.J. et al., Crystal structure of a hyperactive Escherichia coli glycerol kinase mutant Gly230 --> Asp obtained using microfluidic crystallization devices. Biochemistry (2007)

Release Date

2008-11-04

Peptides

Glycerol kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

D
H

Glycerol kinase

Related Entries With Identical Sequence