SMTL ID : 3ezy.1

Crystal structure of probable dehydrogenase TM_0414 from Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-tetramer

Ligands

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 6 residues within 4Å: Chain A: V.260, R.269, G.270, S.271 Chain B: Q.266 Chain C: K.132 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.260, A:R.269 Water bridges: A:S.271, A:R.272 MRD.2: 6 residues within 4Å: Chain A: Q.266 Chain B: V.260, R.269, G.270, S.271 Chain D: K.132 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.269 Water bridges: B:E.257, B:R.272 MRD.5: 5 residues within 4Å: Chain C: Q.266 Chain D: V.260, R.269, G.270, S.271 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:R.269 Water bridges: D:E.257, D:R.272

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 6 residues within 4Å: Chain C: V.260, L.262, R.269, G.270, S.271 Chain D: Q.266 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.262 Water bridges: C:R.272 MPD.4: 4 residues within 4Å: Chain C: V.198, L.199, V.200, E.202 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:E.202 Hydrogen bonds: C:V.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Crystal structure of probable dehydrogenase TM_0414 from Thermotoga maritima. To be published

Release Date

2009-01-13

Peptides

Dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dehydrogenase